Variant report

Variant	rs764738
Chromosome Location	chr8:10144137-10144138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10089244	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs10105815	0.82[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10903323	0.82[CHD][hapmap]
rs11249981	0.97[ASN][1000 genomes]
rs11249982	0.80[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11249983	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11775021	0.84[AMR][1000 genomes]
rs11778739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11782868	0.85[CHD][hapmap]
rs11990063	0.82[CEU][hapmap];0.85[CHD][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes]
rs11994805	0.86[CEU][hapmap];0.84[AMR][1000 genomes]
rs13250850	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13276526	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13278498	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17151588	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17151700	0.81[JPT][hapmap]
rs17151731	0.83[CHD][hapmap]
rs28590421	0.84[AMR][1000 genomes]
rs34113732	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34328494	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36089236	0.90[ASN][1000 genomes]
rs4240641	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4240642	0.81[ASN][1000 genomes]
rs4307347	0.88[CHD][hapmap]
rs4403412	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4503102	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs4506212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4577961	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4840474	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4841311	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56654851	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6601428	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6601431	0.83[CHD][hapmap]
rs6994059	0.83[CHD][hapmap]
rs7003360	0.91[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7004254	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71509165	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs723610	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7821327	0.82[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7842154	0.91[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs9644722	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs764738	MSRA	cis	parietal	SCAN
rs764738	GATA4	cis	parietal	SCAN
rs764738	CTSB	cis	cerebellum	SCAN
rs764738	C8orf74	cis	parietal	SCAN
rs764738	FAM167A	cis	parietal	SCAN
rs764738	PRSS55	cis	cerebellum	SCAN
rs764738	CLDN23	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10130400-10144200	Weak transcription	Liver	Liver
2	chr8:10134200-10147600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:10144000-10144400	Enhancers	Fetal Muscle Leg	muscle
4	chr8:10144000-10144600	Enhancers	Fetal Heart	heart
5	chr8:10144000-10145600	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links