Variant report

Variant	rs17151588
Chromosome Location	chr8:10149212-10149213
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10148268..10150713-chr8:10155428..10157105,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10089244	0.82[CHB][hapmap]
rs10105815	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs10903323	0.82[CHD][hapmap]
rs11249981	0.92[ASN][1000 genomes]
rs11249982	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11249983	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11778739	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11782868	0.85[CHD][hapmap]
rs11990063	0.82[CHB][hapmap];0.85[CHD][hapmap];0.90[MEX][hapmap]
rs11994805	0.82[CHB][hapmap]
rs13249929	0.85[MEX][hapmap]
rs13250850	0.84[EUR][1000 genomes]
rs13276526	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13278498	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17151700	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs17151731	0.83[CHD][hapmap]
rs34328494	0.85[EUR][1000 genomes]
rs36089236	0.93[ASN][1000 genomes]
rs4240641	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4240642	0.82[ASN][1000 genomes]
rs4307347	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs4403412	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4503102	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs4506212	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4577961	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4840474	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4841311	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56654851	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6601428	0.85[CEU][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6601430	0.86[CHB][hapmap]
rs6601431	0.83[CHD][hapmap]
rs6994059	0.83[CHD][hapmap]
rs7003360	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7004254	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71509165	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs723610	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs764738	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7821327	0.91[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7842154	0.83[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs17151588	PRSS55	cis	cerebellum	SCAN
rs17151588	C8orf5	Cis_1M	lymphoblastoid	RTeQTL
rs17151588	GATA4	cis	parietal	SCAN
rs17151588	MSRA	cis	parietal	SCAN
rs17151588	FAM167A	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10144200-10150600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:10144400-10149800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:10144400-10150600	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:10144400-10167000	Weak transcription	Right Ventricle	heart
5	chr8:10145600-10150800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:10148200-10159800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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