Variant report

Variant	rs71509165
Chromosome Location	chr8:10140715-10140716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11778739	0.90[EUR][1000 genomes]
rs11989496	0.83[AFR][1000 genomes]
rs13250850	0.83[EUR][1000 genomes]
rs13276526	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13278498	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17151588	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34328494	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4403412	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4506212	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4577961	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4840474	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4841311	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56654851	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6601428	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7003360	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7004254	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs764738	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7822975	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10130400-10144200	Weak transcription	Liver	Liver
2	chr8:10134200-10147600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:10136600-10142800	Weak transcription	Pancreas	Pancrea
4	chr8:10137600-10141800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:10138200-10141800	Weak transcription	HMEC	breast
6	chr8:10138400-10142000	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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