Variant report

Variant	rs362746
Chromosome Location	chr7:103179595-103179596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12164066	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs2075044	0.92[GIH][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs362771	1.00[CEU][hapmap]
rs3779521	0.92[GIH][hapmap]
rs3808039	0.83[GIH][hapmap]
rs4140931	0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs58135847	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888923	chr7:103143117-103199719	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103158000-103198600	Weak transcription	Liver	Liver
2	chr7:103168400-103181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:103170200-103180000	Weak transcription	K562	blood
4	chr7:103175200-103180600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:103178200-103191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:103179000-103180200	Weak transcription	Fetal Heart	heart
7	chr7:103179200-103180400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:103179200-103181400	Strong transcription	HepG2	liver
9	chr7:103179400-103179600	Flanking Active TSS	Brain Substantia Nigra	brain
10	chr7:103179400-103179800	Flanking Active TSS	Brain Angular Gyrus	brain
11	chr7:103179400-103179800	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr7:103179400-103179800	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr7:103179400-103179800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr7:103179400-103180000	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr7:103179400-103180000	Enhancers	Left Ventricle	heart
16	chr7:103179400-103181800	Enhancers	Fetal Brain Male	brain
17	chr7:103179400-103182000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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