Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr7:103180767-103181903	PBDE	blood:	n/a	n/a
2	MAX	chr7:103180876-103181075	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
RELN	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11971447	0.87[EUR][1000 genomes]
rs2237623	0.84[EUR][1000 genomes]
rs2299332	0.90[EUR][1000 genomes]
rs2299334	0.90[EUR][1000 genomes]
rs2299335	0.90[EUR][1000 genomes]
rs28716995	0.90[EUR][1000 genomes]
rs362746	0.92[GIH][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs3779521	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs3808032	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs3808034	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs3808039	1.00[CEU][hapmap];0.92[GIH][hapmap]
rs3808040	1.00[CEU][hapmap]
rs4140931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55865436	0.83[EUR][1000 genomes]
rs56331323	0.83[EUR][1000 genomes]
rs58135847	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60513369	0.90[EUR][1000 genomes]
rs60546391	0.83[EUR][1000 genomes]
rs73714409	0.90[AMR][1000 genomes]
rs73714431	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888923	chr7:103143117-103199719	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103158000-103198600	Weak transcription	Liver	Liver
2	chr7:103168400-103181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:103178200-103191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:103179200-103181400	Strong transcription	HepG2	liver
5	chr7:103179400-103181800	Enhancers	Fetal Brain Male	brain
6	chr7:103179400-103182000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:103179600-103181800	Enhancers	Fetal Brain Female	brain
8	chr7:103179600-103182400	Enhancers	Brain Substantia Nigra	brain
9	chr7:103179600-103182800	Enhancers	Brain Germinal Matrix	brain
10	chr7:103179800-103182200	Enhancers	Brain Anterior Caudate	brain
11	chr7:103179800-103182400	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:103179800-103182600	Enhancers	Brain Angular Gyrus	brain
13	chr7:103180000-103183400	Enhancers	Brain Hippocampus Middle	brain
14	chr7:103180400-103181600	Enhancers	Left Ventricle	heart
15	chr7:103180400-103199000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:103180800-103181800	Genic enhancers	K562	blood
17	chr7:103181000-103181200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr7:103181000-103181600	Enhancers	Fetal Muscle Leg	muscle
19	chr7:103181000-103182000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: