Variant report

Variant	rs3808034
Chromosome Location	chr7:103153667-103153668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PSMC2-1	chr7:103153216-103154454	ENSG00000234715

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10262359	0.82[ASN][1000 genomes]
rs11971447	0.93[ASN][1000 genomes]
rs12164066	0.89[YRI][hapmap]
rs2075044	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs2237623	0.94[ASN][1000 genomes]
rs2299332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2299334	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2299335	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2429046	0.82[ASN][1000 genomes]
rs2528858	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2528870	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2528877	0.80[ASN][1000 genomes]
rs2711835	0.82[ASN][1000 genomes]
rs2711850	0.82[ASN][1000 genomes]
rs28716995	0.97[ASN][1000 genomes]
rs2965085	0.82[ASN][1000 genomes]
rs3779521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808039	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3808040	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3808048	0.83[EUR][1000 genomes]
rs4140931	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[AMR][1000 genomes]
rs55865436	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56331323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56992010	0.99[ASN][1000 genomes]
rs58135847	0.83[AMR][1000 genomes]
rs59498470	0.82[ASN][1000 genomes]
rs59645313	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60513369	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60546391	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73712397	1.00[EUR][1000 genomes]
rs73714409	1.00[EUR][1000 genomes]
rs73714431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888923	chr7:103143117-103199719	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103130800-103155000	Weak transcription	Brain Substantia Nigra	brain
2	chr7:103130800-103163600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:103137400-103164400	Weak transcription	Brain Anterior Caudate	brain
4	chr7:103153600-103155600	Weak transcription	HepG2	liver

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