Variant report

Variant	rs3808048
Chromosome Location	chr7:103115794-103115795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2299334	0.85[AMR][1000 genomes]
rs2528870	0.81[ASN][1000 genomes]
rs2528877	0.81[ASN][1000 genomes]
rs3779521	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3808032	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3808034	0.83[EUR][1000 genomes]
rs3808039	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3808040	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55865436	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58135847	0.85[AMR][1000 genomes]
rs59645313	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59850329	0.80[ASN][1000 genomes]
rs60546391	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73712397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73714409	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103103600-103121400	Weak transcription	HepG2	liver
2	chr7:103115400-103115800	Enhancers	Stomach Mucosa	stomach
3	chr7:103115400-103115800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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