Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:103129355..103132565-chr7:103134493..103137999,5	K562	blood:
2	chr7:103130156..103132737-chr7:103133584..103135355,2	MCF-7	breast:
3	chr7:103135205..103136843-chr7:103141167..103143732,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10262359	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12164066	0.91[CHB][hapmap]
rs2429046	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2528858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2528877	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2711844	0.93[YRI][hapmap]
rs2711845	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2711848	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2711850	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2965085	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3779521	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs3808032	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3808034	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3808039	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3808040	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3808048	0.81[ASN][1000 genomes]
rs56331323	0.81[ASN][1000 genomes]
rs59498470	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59645313	0.98[ASN][1000 genomes]
rs59850329	0.95[ASN][1000 genomes]
rs73712381	0.81[ASN][1000 genomes]
rs73712397	0.98[ASN][1000 genomes]
rs73714409	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103118400-103138000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:103122800-103141000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:103130800-103135800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:103130800-103155000	Weak transcription	Brain Substantia Nigra	brain
5	chr7:103130800-103163600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:103131200-103136200	Weak transcription	HepG2	liver
7	chr7:103131200-103137000	Weak transcription	Brain Anterior Caudate	brain
8	chr7:103131200-103145000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:103131400-103138000	Weak transcription	K562	blood

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