Variant report

Variant	rs3779521
Chromosome Location	chr7:103159633-103159634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103155726..103158237-chr7:103158510..103161401,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10262359	0.81[ASN][1000 genomes]
rs11971447	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2075044	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs2237623	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299332	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2299335	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2429046	0.81[ASN][1000 genomes]
rs2528858	0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2528870	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2711835	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs2711850	0.81[ASN][1000 genomes]
rs28716995	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2965085	0.81[ASN][1000 genomes]
rs362746	0.92[GIH][hapmap]
rs3808032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808039	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808040	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808048	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4140931	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55865436	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331323	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56992010	1.00[ASN][1000 genomes]
rs58135847	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59498470	0.81[ASN][1000 genomes]
rs59645313	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60513369	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60546391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73712397	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73714409	0.87[EUR][1000 genomes]
rs73714431	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888923	chr7:103143117-103199719	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103130800-103163600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:103137400-103164400	Weak transcription	Brain Anterior Caudate	brain
3	chr7:103155600-103161000	Strong transcription	HepG2	liver
4	chr7:103156000-103162400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:103156400-103163800	Weak transcription	Brain Substantia Nigra	brain
6	chr7:103158000-103198600	Weak transcription	Liver	Liver

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