Variant report

Variant	rs36650
Chromosome Location	chr5:36727629-36727630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13187028	0.85[CEU][hapmap];0.87[TSI][hapmap]
rs165962	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs187391	1.00[CEU][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs245671	0.90[EUR][1000 genomes]
rs245672	1.00[CEU][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs245674	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36668	0.90[EUR][1000 genomes]
rs36671	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36672	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36675	0.81[EUR][1000 genomes]
rs36676	1.00[CEU][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs42320	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs923957	0.85[CEU][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36650	LMBRD2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36725800-36729200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:36725800-36729600	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:36726000-36729200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:36727600-36728400	Bivalent/Poised TSS	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links