Variant report

Variant	rs36668
Chromosome Location	chr5:36745758-36745759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:36744217..36747059-chr5:36749428..36753398,8	MCF-7	breast:
2	chr5:36744502..36747047-chr5:36751959..36755394,3	MCF-7	breast:
3	chr5:36744297..36746833-chr5:36748799..36751172,2	K562	blood:
4	chr5:36743708..36745991-chr5:36870504..36872039,2	K562	blood:
5	chr5:36731899..36747051-chr5:36866466..36880074,35	MCF-7	breast:
6	chr5:36743938..36745907-chr5:36986468..36988860,2	MCF-7	breast:
7	chr5:36735155..36740108-chr5:36743022..36746397,5	MCF-7	breast:
8	chr5:36744805..36746401-chr5:36997708..36999991,2	MCF-7	breast:
9	chr5:36743974..36745923-chr5:36784208..36786489,2	MCF-7	breast:
10	chr5:36743855..36746677-chr5:36948839..36952257,4	MCF-7	breast:
11	chr5:36737510..36747021-chr5:36869125..36879786,23	MCF-7	breast:
12	chr5:36743906..36746722-chr5:37004914..37007847,3	MCF-7	breast:
13	chr5:36744352..36746583-chr5:36857576..36860969,4	MCF-7	breast:
14	chr5:36743568..36746318-chr5:37004430..37006314,2	MCF-7	breast:
15	chr5:36745284..36747145-chr5:36761991..36764868,2	MCF-7	breast:
16	chr5:36742942..36746857-chr5:36753585..36757067,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs165962	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1827214	0.82[AMR][1000 genomes]
rs187391	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1875237	0.83[AMR][1000 genomes]
rs245671	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs245672	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs245674	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs36650	0.90[EUR][1000 genomes]
rs36669	0.88[AMR][1000 genomes]
rs36671	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36672	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36675	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36676	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs42320	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36744000-36745800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr5:36744000-36745800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr5:36744000-36745800	ZNF genes & repeats	Right Atrium	heart
4	chr5:36744000-36746000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr5:36744000-36746000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:36744200-36745800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr5:36744200-36745800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:36744200-36745800	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr5:36744200-36745800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr5:36744200-36746000	Flanking Active TSS	Liver	Liver
11	chr5:36744200-36746000	Active TSS	Colonic Mucosa	Colon
12	chr5:36744200-36746000	Active TSS	Esophagus	oesophagus
13	chr5:36744200-36746200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:36744200-36746200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:36744400-36745800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr5:36744400-36745800	Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr5:36744400-36745800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:36744400-36745800	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr5:36744400-36745800	Active TSS	Left Ventricle	heart
20	chr5:36744400-36745800	Active TSS	Ovary	ovary
21	chr5:36744400-36745800	Active TSS	Pancreas	Pancrea
22	chr5:36744400-36745800	Bivalent/Poised TSS	A549	lung
23	chr5:36744400-36746000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:36744400-36746000	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr5:36744400-36746000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr5:36744400-36746000	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr5:36744400-36746000	Active TSS	Fetal Intestine Large	intestine
28	chr5:36744600-36745800	Active TSS	H1 Cell Line	embryonic stem cell
29	chr5:36744600-36745800	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr5:36744600-36745800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr5:36744600-36745800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
32	chr5:36744600-36745800	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:36744600-36745800	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr5:36744600-36745800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:36744600-36745800	Active TSS	Fetal Intestine Small	intestine
36	chr5:36744600-36745800	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr5:36744600-36745800	Active TSS	Stomach Mucosa	stomach
38	chr5:36744600-36746000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chr5:36744600-36746000	Active TSS	Fetal Kidney	kidney
40	chr5:36744600-36746000	Bivalent/Poised TSS	HepG2	liver
41	chr5:36744600-36746200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
42	chr5:36744600-36746200	Active TSS	Rectal Smooth Muscle	rectum
43	chr5:36744800-36745800	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr5:36744800-36746000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:36744800-36746000	Active TSS	Brain Hippocampus Middle	brain
46	chr5:36745000-36745800	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
47	chr5:36745000-36745800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
48	chr5:36745000-36745800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:36745000-36745800	Active TSS	Stomach Smooth Muscle	stomach
50	chr5:36745000-36746000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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