Variant report

Variant	rs42320
Chromosome Location	chr5:36739535-36739536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36735155..36740108-chr5:36743022..36746397,5	MCF-7	breast:
2	chr5:36737437..36743261-chr5:36869203..36877805,11	K562	blood:
3	chr5:36738583..36742028-chr5:37005460..37008682,3	K562	blood:
4	chr5:36735951..36742213-chr5:36874615..36878501,8	K562	blood:
5	chr5:36731899..36747051-chr5:36866466..36880074,35	MCF-7	breast:
6	chr5:36739435..36740336-chr5:36875697..36877077,6	MCF-7	breast:
7	chr5:36739516..36740130-chr5:36870542..36871202,2	MCF-7	breast:
8	chr5:36739352..36740196-chr5:36875690..36876608,3	MCF-7	breast:
9	chr5:36739471..36740387-chr5:36876041..36876823,2	K562	blood:
10	chr5:36739462..36740370-chr5:36944609..36945180,2	K562	blood:
11	chr5:36737510..36747021-chr5:36869125..36879786,23	MCF-7	breast:
12	chr5:36729166..36730057-chr5:36739489..36740121,2	K562	blood:
13	chr5:36739389..36740461-chr5:36870260..36871235,10	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs165962	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs187391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245671	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs245672	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs245674	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36650	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36668	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36671	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36675	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36729200-36744200	Weak transcription	Spleen	Spleen
2	chr5:36735600-36740200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:36738000-36743800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:36738800-36743000	Weak transcription	Fetal Brain Female	brain
5	chr5:36739200-36739600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:36739200-36740000	Enhancers	HSMMtube	muscle
7	chr5:36739200-36742200	Enhancers	Stomach Mucosa	stomach
8	chr5:36739200-36742400	Enhancers	Fetal Muscle Leg	muscle
9	chr5:36739400-36739600	Enhancers	Small Intestine	intestine
10	chr5:36739400-36739800	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:36739400-36739800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:36739400-36740000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:36739400-36740400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:36739400-36740800	Flanking Active TSS	K562	blood
15	chr5:36739400-36741800	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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