Variant report

Variant	rs369808
Chromosome Location	chr2:7139908-7139909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7137807..7140160-chr2:7167317..7168870,2	K562	blood:
2	chr2:7130628..7133079-chr2:7138526..7140206,2	MCF-7	breast:
3	chr2:7134506..7138740-chr2:7139151..7141142,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151692	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11676629	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs11679967	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689450	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11691419	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695834	0.86[JPT][hapmap]
rs12618219	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs13011206	0.83[ASN][1000 genomes]
rs13019196	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13030643	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13035947	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs177922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879058	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1964092	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs2460403	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2460405	0.86[JPT][hapmap]
rs2460406	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309308	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs309313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309315	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309321	0.86[JPT][hapmap]
rs309323	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs34429264	0.96[ASN][1000 genomes]
rs35505960	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs367906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368831	0.88[EUR][1000 genomes]
rs3755511	0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3771993	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771998	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs3772003	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs377617	0.85[TSI][hapmap]
rs378548	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381214	0.86[JPT][hapmap]
rs3821334	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821335	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs388773	0.86[JPT][hapmap]
rs389351	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389411	0.87[EUR][1000 genomes]
rs392409	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs401164	0.82[EUR][1000 genomes]
rs403407	1.00[ASN][1000 genomes]
rs405503	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410210	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs415204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs422341	0.87[EUR][1000 genomes]
rs425247	0.85[TSI][hapmap]
rs429349	0.91[CEU][hapmap];0.93[GIH][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs434607	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs443852	0.86[JPT][hapmap]
rs445411	0.86[JPT][hapmap]
rs447031	0.85[TSI][hapmap]
rs447721	0.86[JPT][hapmap]
rs451763	0.91[CEU][hapmap];0.93[GIH][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs454999	0.81[TSI][hapmap]
rs530431	0.83[EUR][1000 genomes]
rs6719946	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71436170	0.96[ASN][1000 genomes]
rs73914451	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs771267	0.86[JPT][hapmap]
rs881937	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833326	chr2:6985027-7142564	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7101200-7144000	Weak transcription	Aorta	Aorta
2	chr2:7101200-7154000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:7115800-7148800	Weak transcription	Esophagus	oesophagus
4	chr2:7121200-7145400	Weak transcription	Thymus	Thymus
5	chr2:7121400-7148200	Weak transcription	Fetal Intestine Small	intestine
6	chr2:7124000-7157600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:7126600-7147600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:7126800-7141800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:7126800-7148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:7127200-7154000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:7127600-7143600	Weak transcription	HepG2	liver
12	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr2:7131200-7141000	Strong transcription	Primary T cells from cord blood	blood
14	chr2:7131200-7146800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:7131400-7150200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:7131600-7154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:7131600-7154200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr2:7132800-7146600	Weak transcription	Fetal Heart	heart
20	chr2:7133400-7147400	Weak transcription	Fetal Kidney	kidney
21	chr2:7133800-7147400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:7133800-7147600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr2:7133800-7147800	Weak transcription	Fetal Brain Female	brain
24	chr2:7133800-7150800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr2:7134400-7140800	Strong transcription	Dnd41	blood
26	chr2:7134400-7147400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:7135000-7146800	Weak transcription	Lung	lung
28	chr2:7135200-7145400	Weak transcription	Fetal Brain Male	brain
29	chr2:7135400-7145000	Weak transcription	Brain Germinal Matrix	brain
30	chr2:7135800-7146800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:7137200-7140000	Weak transcription	Fetal Stomach	stomach
32	chr2:7137200-7146200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:7137200-7149800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:7137400-7160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr2:7137600-7142400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:7137800-7144400	Weak transcription	Adipose Nuclei	Adipose
37	chr2:7138000-7140000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:7138000-7140200	Enhancers	Brain Anterior Caudate	brain
39	chr2:7138000-7147000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr2:7138400-7140200	Enhancers	Brain Substantia Nigra	brain
41	chr2:7138400-7140200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr2:7138400-7140400	Enhancers	Brain Angular Gyrus	brain
43	chr2:7138400-7140400	Enhancers	Brain Hippocampus Middle	brain
44	chr2:7138400-7140800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr2:7138600-7140000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:7138600-7140000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr2:7138600-7140200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr2:7138600-7140400	Enhancers	GM12878-XiMat	blood
49	chr2:7138600-7140800	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr2:7138600-7142600	Enhancers	Primary B cells from peripheral blood	blood

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