The 2.0 version of rSNPBase

Variant report

Variant rs401164
Chromosome Location chr2:7164201-7164202
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:7131000-7167600 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr2:7148200-7172600 Weak transcription H9 Cell Line embryonic stem cell
3 chr2:7148800-7171400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr2:7151000-7164600 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr2:7151200-7185200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr2:7152600-7192400 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr2:7154000-7183200 Strong transcription Primary T cells from cord blood blood
8 chr2:7154000-7190200 Strong transcription Dnd41 blood
9 chr2:7154600-7174800 Weak transcription Primary B cells from cord blood blood
10 chr2:7154600-7184200 Weak transcription HUES48 Cell Line embryonic stem cell
11 chr2:7154800-7164800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr2:7155000-7164600 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr2:7155000-7171400 Strong transcription Primary T helper cells fromperipheralblood blood
14 chr2:7155200-7182000 Strong transcription Primary T helper naive cells fromperipheralblood blood
15 chr2:7155600-7178800 Strong transcription Primary T helper cells PMA-I stimulated --
16 chr2:7155800-7164400 Weak transcription Primary monocytes fromperipheralblood blood
17 chr2:7156000-7168800 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr2:7157000-7177600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
19 chr2:7157000-7179200 Weak transcription Aorta Aorta
20 chr2:7157200-7164400 Weak transcription Colonic Mucosa Colon
21 chr2:7157200-7169000 Strong transcription Primary neutrophils fromperipheralblood blood
22 chr2:7157200-7185200 Strong transcription Primary hematopoietic stem cells short term culture blood
23 chr2:7157400-7166000 Weak transcription Rectal Smooth Muscle rectum
24 chr2:7157600-7165400 Strong transcription Primary hematopoietic stem cells blood
25 chr2:7158000-7166000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr2:7158000-7168400 Strong transcription Primary T cells fromperipheralblood blood
27 chr2:7158200-7166000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr2:7158200-7173200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr2:7158200-7188800 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr2:7158400-7164600 Weak transcription iPS-20b Cell Line embryonic stem cell
31 chr2:7158400-7173000 Weak transcription iPS-15b Cell Line embryonic stem cell
32 chr2:7158400-7186800 Weak transcription Placenta Amnion Placenta Amnion
33 chr2:7158600-7164400 Weak transcription H1 Cell Line embryonic stem cell
34 chr2:7158600-7164600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr2:7158600-7167000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr2:7158600-7173400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr2:7159000-7181000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr2:7159200-7166200 Weak transcription Colon Smooth Muscle Colon
39 chr2:7159400-7164400 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr2:7159400-7165000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr2:7159400-7186800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr2:7159600-7180600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr2:7160400-7165400 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr2:7160800-7169200 Weak transcription Placenta Placenta
45 chr2:7161800-7164600 Weak transcription Brain Germinal Matrix brain
46 chr2:7161800-7164600 Weak transcription Monocytes-CD14+_RO01746 blood
47 chr2:7161800-7166800 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr2:7162000-7164400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr2:7162000-7164400 Weak transcription Stomach Smooth Muscle stomach
50 chr2:7162000-7164800 Enhancers Pancreas Pancrea

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Last update: Aug 31, 2015