Variant report

Variant	rs449500
Chromosome Location	chr2:7163796-7163797
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7162976..7165040-chr2:7166130..7169066,2	MCF-7	breast:
2	chr2:7056636..7059579-chr2:7161161..7163816,2	MCF-7	breast:
3	chr2:7158155..7161194-chr2:7163664..7167209,3	K562	blood:

Variant related genes	Relation type
ENSG00000228203	Chromatin interaction
ENSG00000151692	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1964092	0.85[AMR][1000 genomes]
rs2460407	0.94[ASN][1000 genomes]
rs309303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs309305	0.94[ASN][1000 genomes]
rs309308	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs309323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs367495	0.99[ASN][1000 genomes]
rs368831	0.84[AMR][1000 genomes]
rs376219	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377617	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389411	0.85[AMR][1000 genomes]
rs392409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs392709	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401164	0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs403196	0.99[ASN][1000 genomes]
rs409120	0.99[ASN][1000 genomes]
rs410210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs416416	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418312	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs422341	0.85[AMR][1000 genomes]
rs425247	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs433983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs434607	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs447031	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs451763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs454999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs530431	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:7149200-7163800	Weak transcription	Gastric	stomach
5	chr2:7151000-7164600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
9	chr2:7154000-7190200	Strong transcription	Dnd41	blood
10	chr2:7154600-7174800	Weak transcription	Primary B cells from cord blood	blood
11	chr2:7154600-7184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:7154800-7164800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:7155000-7164600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:7155000-7171400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr2:7155200-7182000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:7155600-7178800	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr2:7155800-7164400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr2:7156000-7168800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:7157000-7177600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:7157000-7179200	Weak transcription	Aorta	Aorta
21	chr2:7157200-7164400	Weak transcription	Colonic Mucosa	Colon
22	chr2:7157200-7169000	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:7157400-7166000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:7157600-7165400	Strong transcription	Primary hematopoietic stem cells	blood
26	chr2:7158000-7166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:7158000-7168400	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr2:7158200-7166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:7158200-7173200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr2:7158400-7164600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr2:7158400-7173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr2:7158600-7164400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr2:7158600-7164600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:7158600-7167000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:7158600-7173400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:7159000-7181000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:7159200-7166200	Weak transcription	Colon Smooth Muscle	Colon
40	chr2:7159400-7164400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:7159400-7165000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:7159400-7186800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:7159600-7180600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:7160400-7165400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr2:7160800-7163800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr2:7160800-7169200	Weak transcription	Placenta	Placenta
47	chr2:7161200-7164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:7161200-7164000	Genic enhancers	Brain Cingulate Gyrus	brain
49	chr2:7161600-7164000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr2:7161600-7164000	Genic enhancers	Brain Inferior Temporal Lobe	brain

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