Variant report

Variant	rs309323
Chromosome Location	chr2:7155751-7155752
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7153739..7156212-chr2:7156438..7158208,2	MCF-7	breast:
2	chr2:7155706..7158054-chr2:7170057..7171880,2	MCF-7	breast:
3	chr2:7145805..7147436-chr2:7154549..7156380,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11679967	0.87[CEU][hapmap]
rs11689450	0.83[CEU][hapmap]
rs11691419	0.87[CEU][hapmap]
rs13019196	0.82[CEU][hapmap]
rs13030643	0.83[CEU][hapmap]
rs177922	0.82[EUR][1000 genomes]
rs1964092	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2460403	0.84[EUR][1000 genomes]
rs2460406	0.83[EUR][1000 genomes]
rs2460407	0.95[ASN][1000 genomes]
rs309303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs309305	0.95[ASN][1000 genomes]
rs309308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309313	0.83[EUR][1000 genomes]
rs309315	0.83[EUR][1000 genomes]
rs367495	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs367906	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs368831	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs369808	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs3755511	0.83[CEU][hapmap]
rs376219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3771993	0.82[EUR][1000 genomes]
rs377617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs378548	0.83[EUR][1000 genomes]
rs3821334	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs3821335	0.83[CEU][hapmap]
rs389351	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs389411	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs392409	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392709	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs401164	0.90[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403196	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs405503	0.83[EUR][1000 genomes]
rs409120	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs410210	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs415204	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs416416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs418312	1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs418878	0.83[EUR][1000 genomes]
rs422341	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs425247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs429349	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs433983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs434607	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs447627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs449500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs451763	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs454999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs530431	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7124000-7157600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:7137400-7160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr2:7142600-7163000	Weak transcription	Small Intestine	intestine
6	chr2:7145200-7156200	Enhancers	Brain Angular Gyrus	brain
7	chr2:7146800-7156000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:7147200-7158600	Enhancers	Colon Smooth Muscle	Colon
9	chr2:7147400-7156000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:7147400-7157000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:7147400-7159200	Weak transcription	Thymus	Thymus
12	chr2:7148000-7155800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:7148200-7156000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr2:7148200-7159400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:7148800-7156400	Enhancers	Brain Hippocampus Middle	brain
17	chr2:7148800-7158000	Weak transcription	Brain Germinal Matrix	brain
18	chr2:7148800-7159200	Enhancers	Brain Substantia Nigra	brain
19	chr2:7148800-7160200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:7148800-7160800	Enhancers	Fetal Heart	heart
21	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:7149000-7157800	Enhancers	Brain Anterior Caudate	brain
23	chr2:7149200-7158200	Weak transcription	Fetal Intestine Small	intestine
24	chr2:7149200-7159200	Enhancers	Brain Cingulate Gyrus	brain
25	chr2:7149200-7159400	Weak transcription	Placenta	Placenta
26	chr2:7149200-7160000	Weak transcription	Esophagus	oesophagus
27	chr2:7149200-7160400	Weak transcription	Lung	lung
28	chr2:7149200-7163800	Weak transcription	Gastric	stomach
29	chr2:7149400-7157000	Weak transcription	Colonic Mucosa	Colon
30	chr2:7150000-7157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr2:7150000-7159000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:7150600-7157000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:7150600-7162400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr2:7150800-7157600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr2:7151000-7159800	Weak transcription	Fetal Thymus	thymus
36	chr2:7151000-7164600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr2:7151200-7157600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr2:7151200-7157800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr2:7151200-7160200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr2:7152800-7157400	Enhancers	Rectal Smooth Muscle	rectum
43	chr2:7153000-7156000	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr2:7153000-7162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:7153600-7159000	Enhancers	Fetal Lung	lung
46	chr2:7153800-7156000	Enhancers	Fetal Kidney	kidney
47	chr2:7153800-7156200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:7153800-7156400	Enhancers	Ovary	ovary
49	chr2:7153800-7156400	Enhancers	Psoas Muscle	Psoas
50	chr2:7153800-7158400	Enhancers	Fetal Stomach	stomach

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