Variant report

Variant	rs370846516
Chromosome Location	chr20:25731938-25731939
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182B-1	chr20:25730940-25732440	XLOC_013708
2	lnc-GINS1-2	chr20:25731854-25731974	ENSG00000226465.1
3	lnc-GINS1-2	chr20:25731813-25731974	NONHSAT079184

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2758517	chr20:25701992-26319569	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	esv2758790	chr20:25701992-26319569	Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
6	nsv1062442	chr20:25714010-25754838	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv470545	chr20:25715507-26309255	Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
8	esv18917	chr20:25731048-25780918	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv820681	chr20:25731048-25780918	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25730600-25732400	Active TSS	Rectal Smooth Muscle	rectum
2	chr20:25731200-25732000	Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr20:25731200-25732000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:25731200-25732000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr20:25731200-25732000	Enhancers	Small Intestine	intestine
6	chr20:25731200-25732200	Active TSS	Duodenum Mucosa	Duodenum
7	chr20:25731200-25732200	Active TSS	Fetal Brain Female	brain
8	chr20:25731200-25732200	Active TSS	Right Ventricle	heart
9	chr20:25731200-25732200	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr20:25731200-25732400	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr20:25731200-25732400	Active TSS	Primary T cells fromperipheralblood	blood
12	chr20:25731200-25732400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr20:25731200-25732400	Enhancers	Fetal Heart	heart
14	chr20:25731200-25732400	Active TSS	Fetal Intestine Small	intestine
15	chr20:25731200-25732400	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr20:25731200-25732600	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr20:25731200-25732600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr20:25731200-25732600	Active TSS	Fetal Intestine Large	intestine
19	chr20:25731200-25732800	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr20:25731200-25732800	Enhancers	Spleen	Spleen
21	chr20:25731400-25732000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr20:25731400-25732000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr20:25731400-25732000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr20:25731400-25732000	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr20:25731400-25732000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr20:25731400-25732000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr20:25731400-25732000	Active TSS	Psoas Muscle	Psoas
28	chr20:25731400-25732000	Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr20:25731400-25732000	Active TSS	NHDF-Ad	bronchial
30	chr20:25731400-25732200	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr20:25731400-25732200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr20:25731400-25732200	Active TSS	Muscle Satellite Cultured Cells	--
33	chr20:25731400-25732200	Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr20:25731400-25732200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr20:25731400-25732200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr20:25731400-25732200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
37	chr20:25731400-25732200	Active TSS	Aorta	Aorta
38	chr20:25731400-25732200	Active TSS	Brain Angular Gyrus	brain
39	chr20:25731400-25732200	Active TSS	Brain Anterior Caudate	brain
40	chr20:25731400-25732200	Active TSS	Brain Cingulate Gyrus	brain
41	chr20:25731400-25732200	Active TSS	Brain Hippocampus Middle	brain
42	chr20:25731400-25732200	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr20:25731400-25732200	Active TSS	Brain Substantia Nigra	brain
44	chr20:25731400-25732200	Active TSS	Colonic Mucosa	Colon
45	chr20:25731400-25732200	Active TSS	Fetal Lung	lung
46	chr20:25731400-25732200	Active TSS	Left Ventricle	heart
47	chr20:25731400-25732200	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr20:25731400-25732200	Active TSS	Right Atrium	heart
49	chr20:25731400-25732200	Active TSS	HSMM	muscle
50	chr20:25731400-25732200	Active TSS	K562	blood

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