Variant report

Variant	rs371206299
Chromosome Location	chr19:36210473-36210474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:36207787..36211113-chr19:36265053..36268029,3	K562	blood:
2	chr19:36208921..36210608-chr19:36499552..36501350,2	MCF-7	breast:
3	chr19:36208210..36211144-chr19:36264877..36267691,4	MCF-7	breast:
4	chr19:36207151..36210695-chr19:36264649..36268718,5	K562	blood:
5	chr19:35758844..35760411-chr19:36208018..36210634,2	MCF-7	breast:
6	chr19:36203511..36205032-chr19:36208383..36210782,2	MCF-7	breast:
7	chr19:36206099..36210841-chr19:36246614..36251827,8	MCF-7	breast:
8	chr19:36207379..36214815-chr19:36234227..36241330,25	MCF-7	breast:
9	chr19:36205476..36213390-chr19:36226310..36233646,27	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000105698	Chromatin interaction
ENSG00000126246	Chromatin interaction
ENSG00000267439	Chromatin interaction
ENSG00000167595	Chromatin interaction
ENSG00000188223	Chromatin interaction
ENSG00000181392	Chromatin interaction
ENSG00000011590	Chromatin interaction
ENSG00000267120	Chromatin interaction
ENSG00000004776	Chromatin interaction
ENSG00000205155	Chromatin interaction
ENSG00000267796	Chromatin interaction
ENSG00000004777	Chromatin interaction
ENSG00000161265	Chromatin interaction
ENSG00000105663	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
3	nsv458566	chr19:36156588-36265508	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv579422	chr19:36156588-36265508	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv911633	chr19:36206050-36283847	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
8	nsv911634	chr19:36206050-36290977	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv828544	chr19:36207191-36210758	Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
10	nsv543996	chr19:36210269-36265431	Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv1057830	chr19:36210269-36279794	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv543997	chr19:36210269-36279794	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36207200-36210600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:36207800-36210600	Active TSS	HSMM	muscle
3	chr19:36209400-36210600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:36209400-36210600	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr19:36209400-36210600	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr19:36209400-36210600	Flanking Active TSS	Fetal Brain Male	brain
7	chr19:36209400-36210600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr19:36209600-36210600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr19:36209600-36210600	Flanking Active TSS	Liver	Liver
10	chr19:36209600-36210600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr19:36209600-36210600	Flanking Active TSS	Fetal Brain Female	brain
12	chr19:36209600-36210800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr19:36209800-36210600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr19:36209800-36210600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr19:36209800-36210600	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr19:36209800-36210600	Flanking Active TSS	Pancreas	Pancrea
17	chr19:36210000-36210600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr19:36210000-36210600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr19:36210000-36210600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr19:36210000-36210600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr19:36210000-36210600	Enhancers	Brain Substantia Nigra	brain
22	chr19:36210000-36210600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr19:36210000-36210600	Flanking Active TSS	GM12878-XiMat	blood
24	chr19:36210000-36210600	Flanking Active TSS	HMEC	breast
25	chr19:36210000-36210800	Genic enhancers	Primary B cells from peripheral blood	blood
26	chr19:36210000-36210800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr19:36210000-36210800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr19:36210000-36210800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
29	chr19:36210000-36210800	Enhancers	Stomach Mucosa	stomach
30	chr19:36210000-36211200	Transcr. at gene 5' and 3'	Dnd41	blood
31	chr19:36210000-36211400	Weak transcription	Aorta	Aorta
32	chr19:36210000-36212800	Genic enhancers	Spleen	Spleen
33	chr19:36210200-36210600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr19:36210200-36210600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr19:36210200-36210600	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr19:36210200-36210600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr19:36210200-36210600	Enhancers	Brain Anterior Caudate	brain
38	chr19:36210200-36210600	Enhancers	Colon Smooth Muscle	Colon
39	chr19:36210200-36210600	Enhancers	Esophagus	oesophagus
40	chr19:36210200-36210600	Genic enhancers	Fetal Lung	lung
41	chr19:36210200-36210600	Weak transcription	Ovary	ovary
42	chr19:36210200-36210600	Transcr. at gene 5' and 3'	Hela-S3	cervix
43	chr19:36210200-36210600	Flanking Bivalent TSS/Enh	HepG2	liver
44	chr19:36210200-36210600	Enhancers	HUVEC	blood vessel
45	chr19:36210200-36210800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr19:36210200-36210800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr19:36210200-36210800	Enhancers	Primary T cells fromperipheralblood	blood
48	chr19:36210200-36210800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr19:36210200-36210800	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr19:36210200-36210800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links