Variant report

Variant	rs371350
Chromosome Location	chr14:65279944-65279945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65277232..65280033-chr14:65282761..65285500,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10137840	1.00[CEU][hapmap];0.96[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs11158560	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11851715	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1695779	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17102113	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2750083	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28441086	0.85[EUR][1000 genomes]
rs400646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4049	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs416807	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573574	0.83[YRI][hapmap]
rs7147977	0.83[YRI][hapmap]
rs7149843	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7342528	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8017192	0.83[YRI][hapmap]
rs8022355	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516768	chr14:65277890-65279944	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv521286	chr14:65277890-65281944	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
2	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65273800-65287200	Weak transcription	K562	blood
6	chr14:65274600-65284600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:65275000-65281800	Weak transcription	Right Ventricle	heart
8	chr14:65275800-65290000	Weak transcription	Psoas Muscle	Psoas
9	chr14:65278400-65280800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr14:65279000-65280200	Enhancers	Fetal Muscle Leg	muscle
11	chr14:65279000-65280800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr14:65279200-65281000	Weak transcription	A549	lung
13	chr14:65279400-65282200	Weak transcription	Right Atrium	heart
14	chr14:65279400-65284200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:65279400-65284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:65279400-65284400	Weak transcription	Aorta	Aorta
17	chr14:65279400-65284600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:65279400-65287000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:65279600-65281600	Weak transcription	Left Ventricle	heart
20	chr14:65279600-65282400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links