Variant report

Variant	rs7147977
Chromosome Location	chr14:65286319-65286320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65282387..65284619-chr14:65285854..65288049,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1271041	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102130	0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs371350	0.83[YRI][hapmap]
rs389986	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57329695	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573574	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7149479	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151337	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8004397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016674	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016839	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017192	0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022259	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
3	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
4	chr14:65273800-65287200	Weak transcription	K562	blood
5	chr14:65275800-65290000	Weak transcription	Psoas Muscle	Psoas
6	chr14:65279400-65287000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:65281800-65288400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
8	chr14:65283600-65289400	Weak transcription	Right Ventricle	heart
9	chr14:65283600-65289600	Weak transcription	Fetal Heart	heart
10	chr14:65284200-65289200	Genic enhancers	Fetal Muscle Leg	muscle
11	chr14:65284600-65287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:65284600-65289800	Weak transcription	Left Ventricle	heart
13	chr14:65284800-65289600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:65285000-65287200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr14:65285000-65288000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:65285000-65289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:65285000-65289800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:65285000-65290200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:65285200-65289400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:65285400-65289400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:65285400-65289800	Weak transcription	Spleen	Spleen
22	chr14:65285800-65288400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr14:65286200-65287200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links