Variant report

Variant	rs372431
Chromosome Location	chr16:33935389-33935390
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:204530942..204531922-chr16:33934847..33935468,2	MCF-7	breast:
2	chr16:33934184..33936917-chr16:33937147..33938891,2	MCF-7	breast:
3	chr16:33934779..33935463-chr4:41938365..41938885,3	MCF-7	breast:
4	chr16:33934840..33935444-chr3:161795687..161796207,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200408	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11859816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11860090	1.00[EUR][1000 genomes]
rs11864195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330739	1.00[AMR][1000 genomes]
rs1865388	0.83[EUR][1000 genomes]
rs2449091	0.83[EUR][1000 genomes]
rs2630995	0.83[EUR][1000 genomes]
rs2630996	0.83[EUR][1000 genomes]
rs2631000	0.83[EUR][1000 genomes]
rs55775986	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57738121	0.89[AFR][1000 genomes]
rs57998501	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58011576	1.00[AMR][1000 genomes]
rs58201018	1.00[EUR][1000 genomes]
rs60577816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6607270	1.00[EUR][1000 genomes]
rs7187368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7189346	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7189850	1.00[AMR][1000 genomes]
rs7195912	1.00[AMR][1000 genomes]
rs7197480	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7197934	1.00[AMR][1000 genomes]
rs7202187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7206004	1.00[EUR][1000 genomes]
rs7206817	0.83[EUR][1000 genomes]
rs74015423	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74016504	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7498910	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8044485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8049710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054991	1.00[AMR][1000 genomes]
rs8062479	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8063210	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8063616	1.00[AMR][1000 genomes]
rs9925286	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066297	chr16:33054646-34011271	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
2	nsv1063683	chr16:33338112-34011271	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv906567	chr16:33460718-33944268	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1056975	chr16:33526608-34011271	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv433445	chr16:33556312-33959923	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1066871	chr16:33603125-34011271	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv1063500	chr16:33627814-34011271	Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1061765	chr16:33665155-34011271	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
9	esv1823144	chr16:33673394-34211708	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
10	nsv1066325	chr16:33754979-34011271	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
11	nsv906603	chr16:33769308-34176875	Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
12	esv1798568	chr16:33773021-33940418	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv1062253	chr16:33773053-33963957	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
14	nsv1057370	chr16:33773053-34011271	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
15	nsv572296	chr16:33795687-34004547	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
16	nsv984324	chr16:33806463-33966478	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv1059491	chr16:33811489-33978846	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv1055536	chr16:33811489-34011271	Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv1064122	chr16:33827050-33940200	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv1058975	chr16:33827050-33978846	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
21	nsv1065867	chr16:33827050-34011271	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
22	nsv572298	chr16:33827393-34020957	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
23	nsv572299	chr16:33827393-34196681	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
24	nsv1060685	chr16:33828054-34011271	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
25	nsv1056197	chr16:33828713-34011271	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
26	nsv906622	chr16:33836510-34176875	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
27	nsv1062549	chr16:33836789-34011271	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
28	nsv1061646	chr16:33837886-34011271	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
29	nsv572305	chr16:33845195-34020957	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
30	nsv572306	chr16:33845195-34196681	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
31	nsv984499	chr16:33851603-33938131	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
32	nsv962141	chr16:33864394-33948518	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
33	esv1801563	chr16:33864739-34183982	ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
34	esv1796282	chr16:33864739-34196681	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
35	nsv572324	chr16:33870629-33944268	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
36	nsv906639	chr16:33870629-33944268	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	nsv572328	chr16:33870994-34020957	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
38	nsv572331	chr16:33872091-34020957	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
39	esv1842708	chr16:33872091-34196681	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
40	nsv572349	chr16:33894640-33944268	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
41	nsv572352	chr16:33897978-34020957	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
42	esv3333468	chr16:33902508-33992414	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
43	nsv833208	chr16:33903020-34020334	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
44	esv3361634	chr16:33913301-33973683	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
45	esv3409079	chr16:33917016-33973656	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
46	esv3409997	chr16:33917580-33973683	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
47	esv3377462	chr16:33917600-33973653	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
48	esv3367843	chr16:33917604-33973657	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
49	esv3426172	chr16:33917735-34021567	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
50	esv3326188	chr16:33917735-34022251	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:33932000-33941200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr16:33932200-33957000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr16:33932200-33957200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr16:33932400-33937400	ZNF genes & repeats	Primary T cells from cord blood	blood
5	chr16:33932400-33951600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr16:33932400-33957000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr16:33932400-33957000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr16:33932400-33961800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr16:33932800-33966600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr16:33933000-33941000	ZNF genes & repeats	Fetal Brain Male	brain
11	chr16:33933000-33961600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:33933200-33937400	ZNF genes & repeats	Fetal Lung	lung
13	chr16:33933200-33940800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr16:33933800-33941200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
15	chr16:33934000-33936600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr16:33934200-33935800	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
17	chr16:33934200-33936400	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr16:33934200-33939600	ZNF genes & repeats	Liver	Liver
19	chr16:33934200-33939800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr16:33934200-33939800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:33934400-33939400	ZNF genes & repeats	Thymus	Thymus
22	chr16:33934800-33936000	Weak transcription	Fetal Heart	heart
23	chr16:33934800-33938400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr16:33934800-33939600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr16:33935000-33935600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr16:33935000-33939600	ZNF genes & repeats	Right Ventricle	heart
27	chr16:33935000-33939800	ZNF genes & repeats	Esophagus	oesophagus
28	chr16:33935000-33939800	ZNF genes & repeats	HepG2	liver
29	chr16:33935000-33940000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
30	chr16:33935200-33935600	Active TSS	K562	blood
31	chr16:33935200-33937600	ZNF genes & repeats	Fetal Stomach	stomach
32	chr16:33935200-33938200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
33	chr16:33935200-33939400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr16:33935200-33939600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr16:33935200-33939600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr16:33935200-33939600	ZNF genes & repeats	Adipose Nuclei	Adipose
37	chr16:33935200-33939800	ZNF genes & repeats	Gastric	stomach
38	chr16:33935200-33939800	ZNF genes & repeats	Lung	lung
39	chr16:33935200-33939800	ZNF genes & repeats	Spleen	Spleen
40	chr16:33935200-33939800	ZNF genes & repeats	NHEK	skin

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