Variant report

Variant	rs74016504
Chromosome Location	chr16:33945221-33945222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11859816	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11860090	0.86[EUR][1000 genomes]
rs11864195	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13330739	0.81[AMR][1000 genomes]
rs372431	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55775986	0.81[AMR][1000 genomes]
rs57998501	0.81[AMR][1000 genomes]
rs58011576	0.81[AMR][1000 genomes]
rs58201018	0.86[EUR][1000 genomes]
rs60577816	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6607270	0.86[EUR][1000 genomes]
rs7187368	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7189346	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7189850	0.81[AMR][1000 genomes]
rs7195912	0.81[AMR][1000 genomes]
rs7197480	0.81[AMR][1000 genomes]
rs7197934	0.81[AMR][1000 genomes]
rs7202187	0.81[AMR][1000 genomes]
rs7206004	0.86[EUR][1000 genomes]
rs74015423	0.81[AMR][1000 genomes]
rs7498910	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8043942	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8044485	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8044938	0.82[AFR][1000 genomes]
rs8049710	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8054991	0.81[AMR][1000 genomes]
rs8062479	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8063210	0.81[AMR][1000 genomes]
rs8063616	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066297	chr16:33054646-34011271	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
2	nsv1063683	chr16:33338112-34011271	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1056975	chr16:33526608-34011271	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv433445	chr16:33556312-33959923	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv1066871	chr16:33603125-34011271	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1063500	chr16:33627814-34011271	Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv1061765	chr16:33665155-34011271	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	esv1823144	chr16:33673394-34211708	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
9	nsv1066325	chr16:33754979-34011271	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	nsv906603	chr16:33769308-34176875	Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	nsv1062253	chr16:33773053-33963957	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv1057370	chr16:33773053-34011271	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
13	nsv572296	chr16:33795687-34004547	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
14	nsv984324	chr16:33806463-33966478	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv1059491	chr16:33811489-33978846	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv1055536	chr16:33811489-34011271	Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv1058975	chr16:33827050-33978846	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
18	nsv1065867	chr16:33827050-34011271	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
19	nsv572298	chr16:33827393-34020957	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
20	nsv572299	chr16:33827393-34196681	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
21	nsv1060685	chr16:33828054-34011271	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
22	nsv1056197	chr16:33828713-34011271	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
23	nsv906622	chr16:33836510-34176875	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
24	nsv1062549	chr16:33836789-34011271	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
25	nsv1061646	chr16:33837886-34011271	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
26	nsv572305	chr16:33845195-34020957	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
27	nsv572306	chr16:33845195-34196681	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
28	nsv962141	chr16:33864394-33948518	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
29	esv1801563	chr16:33864739-34183982	ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
30	esv1796282	chr16:33864739-34196681	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
31	nsv572328	chr16:33870994-34020957	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
32	nsv572331	chr16:33872091-34020957	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
33	esv1842708	chr16:33872091-34196681	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
34	nsv572352	chr16:33897978-34020957	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
35	esv3333468	chr16:33902508-33992414	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
36	nsv833208	chr16:33903020-34020334	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
37	esv3361634	chr16:33913301-33973683	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
38	esv3409079	chr16:33917016-33973656	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
39	esv3409997	chr16:33917580-33973683	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
40	esv3377462	chr16:33917600-33973653	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
41	esv3367843	chr16:33917604-33973657	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
42	esv3426172	chr16:33917735-34021567	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
43	esv3326188	chr16:33917735-34022251	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
44	esv3379002	chr16:33918441-33973683	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
45	esv2484726	chr16:33919562-33987754	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
46	nsv827634	chr16:33922607-33965749	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
47	nsv827635	chr16:33922607-33968012	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
48	esv32538	chr16:33935506-34459464	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
49	esv1822457	chr16:33939146-33965281	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
50	nsv431453	chr16:33940200-34760967	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:33932200-33957000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr16:33932200-33957200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr16:33932400-33951600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:33932400-33957000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr16:33932400-33957000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr16:33932400-33961800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr16:33932800-33966600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr16:33933000-33961600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr16:33942200-33945600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr16:33942200-33946400	ZNF genes & repeats	Brain Hippocampus Middle	brain
11	chr16:33942200-33946400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
12	chr16:33942200-33946400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr16:33942200-33946400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr16:33942200-33946600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr16:33942200-33946600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
16	chr16:33942200-33946600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr16:33942200-33946600	ZNF genes & repeats	Liver	Liver
18	chr16:33942200-33946600	ZNF genes & repeats	Brain Anterior Caudate	brain
19	chr16:33942200-33946600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
20	chr16:33942200-33946600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
21	chr16:33942200-33951400	ZNF genes & repeats	Fetal Brain Male	brain
22	chr16:33942200-33954200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr16:33942400-33945600	ZNF genes & repeats	Fetal Stomach	stomach
24	chr16:33942400-33945800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
25	chr16:33942400-33946200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr16:33942400-33946200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
27	chr16:33942400-33946200	ZNF genes & repeats	Placenta	Placenta
28	chr16:33942400-33946200	ZNF genes & repeats	Ovary	ovary
29	chr16:33942400-33946400	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr16:33942400-33946400	ZNF genes & repeats	Brain Substantia Nigra	brain
31	chr16:33942400-33946400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
32	chr16:33942400-33946400	ZNF genes & repeats	HMEC	breast
33	chr16:33942400-33946600	ZNF genes & repeats	Left Ventricle	heart
34	chr16:33942400-33946600	ZNF genes & repeats	Pancreas	Pancrea
35	chr16:33942400-33946600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr16:33942400-33946600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr16:33942400-33946600	ZNF genes & repeats	Thymus	Thymus
38	chr16:33942600-33946600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
39	chr16:33943000-33946600	ZNF genes & repeats	GM12878-XiMat	blood
40	chr16:33943600-33945400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
41	chr16:33943800-33946400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
42	chr16:33944000-33946400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
43	chr16:33944000-33946400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
44	chr16:33944000-33946600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr16:33944400-33946400	ZNF genes & repeats	Fetal Lung	lung
46	chr16:33944800-33945600	Weak transcription	Primary T cells from cord blood	blood
47	chr16:33944800-33945600	Weak transcription	Fetal Heart	heart
48	chr16:33944800-33945600	Weak transcription	Stomach Mucosa	stomach
49	chr16:33944800-33946000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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