The 2.0 version of rSNPBase

Variant report

Variant rs3731985
Chromosome Location chr2:172309506-172309507
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:172291000-172319800 Weak transcription Stomach Mucosa stomach
2 chr2:172291600-172311800 Weak transcription Fetal Brain Male brain
3 chr2:172291800-172338200 Weak transcription Primary neutrophils fromperipheralblood blood
4 chr2:172292000-172312800 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr2:172292000-172341600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr2:172292600-172311600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr2:172292600-172312000 Strong transcription Monocytes-CD14+_RO01746 blood
8 chr2:172292600-172317600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr2:172292600-172320400 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr2:172293000-172318600 Strong transcription iPS-20b Cell Line embryonic stem cell
11 chr2:172293200-172311800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr2:172293200-172319400 Strong transcription HUES6 Cell Line embryonic stem cell
13 chr2:172293200-172319400 Strong transcription HUES64 Cell Line embryonic stem cell
14 chr2:172295000-172309600 Strong transcription HepG2 liver
15 chr2:172296600-172309600 Strong transcription Primary T regulatory cells fromperipheralblood blood
16 chr2:172297000-172313000 Weak transcription A549 lung
17 chr2:172297000-172314000 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr2:172298200-172310400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr2:172298200-172314200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr2:172298200-172326600 Weak transcription Colonic Mucosa Colon
21 chr2:172298400-172311800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr2:172298400-172314200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr2:172298400-172325400 Weak transcription H9 Cell Line embryonic stem cell
24 chr2:172298400-172325600 Weak transcription Hela-S3 cervix
25 chr2:172298400-172326200 Weak transcription NHEK skin
26 chr2:172298400-172334400 Weak transcription Small Intestine intestine
27 chr2:172298400-172339400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr2:172298600-172341400 Weak transcription NHLF lung
29 chr2:172299400-172325400 Weak transcription Gastric stomach
30 chr2:172300600-172338600 Weak transcription ES-WA7 Cell Line embryonic stem cell
31 chr2:172301600-172310600 Strong transcription Duodenum Mucosa Duodenum
32 chr2:172303400-172310600 Strong transcription HUES48 Cell Line embryonic stem cell
33 chr2:172303600-172310200 Strong transcription iPS-18 Cell Line embryonic stem cell
34 chr2:172303600-172310600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr2:172303600-172316200 Strong transcription Primary T helper cells PMA-I stimulated --
36 chr2:172303600-172317000 Strong transcription Primary B cells from peripheral blood blood
37 chr2:172303800-172309600 Strong transcription Adipose Nuclei Adipose
38 chr2:172303800-172311600 Strong transcription Primary monocytes fromperipheralblood blood
39 chr2:172303800-172312200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr2:172303800-172317400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr2:172304000-172309600 Strong transcription Rectal Mucosa Donor 29 rectum
42 chr2:172304000-172309800 Strong transcription Fetal Adrenal Gland Adrenal Gland
43 chr2:172304000-172309800 Strong transcription Fetal Intestine Large intestine
44 chr2:172304000-172309800 Strong transcription Skeletal Muscle Female skeletal muscle
45 chr2:172304000-172312000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr2:172304000-172312200 Strong transcription Primary T cells fromperipheralblood blood
47 chr2:172304000-172312400 Strong transcription Primary hematopoietic stem cells short term culture blood
48 chr2:172304000-172312600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr2:172304200-172310600 Strong transcription Dnd41 blood
50 chr2:172304200-172310800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015