The 2.0 version of rSNPBase

Variant report

Variant rs62183539
Chromosome Location chr2:172345846-172345847
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:172306000-172348000 Weak transcription iPS-15b Cell Line embryonic stem cell
2 chr2:172309600-172348400 Weak transcription Fetal Heart heart
3 chr2:172327000-172346800 Weak transcription Colonic Mucosa Colon
4 chr2:172327200-172346600 Weak transcription Thymus Thymus
5 chr2:172327200-172348800 Weak transcription Spleen Spleen
6 chr2:172327400-172346800 Weak transcription Hela-S3 cervix
7 chr2:172327400-172347600 Weak transcription Brain Cingulate Gyrus brain
8 chr2:172327800-172346000 Weak transcription Fetal Brain Male brain
9 chr2:172330400-172346200 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr2:172333400-172347800 Weak transcription Brain Angular Gyrus brain
11 chr2:172334600-172349200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr2:172334800-172346200 Weak transcription Psoas Muscle Psoas
13 chr2:172334800-172346800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr2:172334800-172347200 Weak transcription Brain Inferior Temporal Lobe brain
15 chr2:172334800-172349200 Weak transcription Esophagus oesophagus
16 chr2:172335200-172346400 Weak transcription Stomach Smooth Muscle stomach
17 chr2:172335400-172349000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr2:172337800-172348000 Weak transcription Brain Substantia Nigra brain
19 chr2:172338000-172349400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr2:172338200-172347000 Weak transcription HMEC breast
21 chr2:172338400-172349800 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr2:172339600-172347800 Weak transcription H9 Cell Line embryonic stem cell
23 chr2:172339600-172348000 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr2:172339800-172348000 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr2:172339800-172350600 Weak transcription Primary T cells fromperipheralblood blood
26 chr2:172339800-172352200 Weak transcription H1 Cell Line embryonic stem cell
27 chr2:172340000-172347000 Weak transcription Primary T helper cells PMA-I stimulated --
28 chr2:172340000-172347800 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr2:172340000-172348000 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr2:172340000-172348000 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr2:172340000-172348000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr2:172340000-172348600 Weak transcription Ovary ovary
33 chr2:172340000-172351200 Weak transcription Aorta Aorta
34 chr2:172340000-172368400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr2:172340400-172348000 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr2:172341000-172348000 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr2:172342200-172347000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr2:172342200-172348200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr2:172342200-172348600 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr2:172344600-172346000 ZNF genes & repeats Primary T cells from cord blood blood
41 chr2:172344600-172346000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr2:172344800-172348600 Enhancers Rectal Mucosa Donor 31 rectum
43 chr2:172345200-172346200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
44 chr2:172345200-172346800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr2:172345200-172346800 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr2:172345400-172346200 ZNF genes & repeats Liver Liver
47 chr2:172345400-172346600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr2:172345400-172346800 Weak transcription NHEK skin
49 chr2:172345400-172348200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr2:172345600-172346800 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015