Variant report

Variant	rs3732358
Chromosome Location	chr3:119536074-119536075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119529297..119532483-chr3:119535259..119538181,3	MCF-7	breast:
2	chr3:119535902..119537516-chr3:119539010..119541085,2	MCF-7	breast:
3	chr3:119531331..119533784-chr3:119534969..119537956,2	K562	blood:
4	chr3:119531732..119533815-chr3:119534255..119536418,2	MCF-7	breast:
5	chr3:119533302..119535583-chr3:119535890..119538879,2	MCF-7	breast:
6	chr3:119532575..119536291-chr3:119538231..119540719,3	K562	blood:
7	chr3:119535975..119536495-chr5:109024930..109025580,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000112893	Chromatin interaction
ENSG00000144852	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1037974	0.82[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs1579030	1.00[ASN][1000 genomes]
rs1579032	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17246737	1.00[JPT][hapmap]
rs1903764	1.00[AMR][1000 genomes]
rs28821007	1.00[JPT][hapmap]
rs3732361	0.91[YRI][hapmap]
rs4491944	1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57027844	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57265162	1.00[ASN][1000 genomes]
rs58299321	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58371446	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59368677	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60675046	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60993278	1.00[AMR][1000 genomes]
rs61188334	1.00[AMR][1000 genomes]
rs61511292	1.00[AMR][1000 genomes]
rs61566983	1.00[AMR][1000 genomes]
rs6784598	0.82[YRI][hapmap]
rs72548703	1.00[ASN][1000 genomes]
rs922337	1.00[AMR][1000 genomes]
rs9843795	1.00[JPT][hapmap]
rs9849889	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9853463	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9865193	1.00[JPT][hapmap]
rs9867915	1.00[JPT][hapmap]
rs9872321	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119529400-119537000	Strong transcription	Fetal Intestine Large	intestine
2	chr3:119529400-119537800	Strong transcription	Fetal Intestine Small	intestine
3	chr3:119529400-119544000	Weak transcription	Right Atrium	heart
4	chr3:119529400-119566600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:119529600-119543400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:119529600-119582000	Weak transcription	Spleen	Spleen
7	chr3:119529800-119543600	Weak transcription	GM12878-XiMat	blood
8	chr3:119530200-119542800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:119531600-119536200	Weak transcription	Fetal Heart	heart
10	chr3:119532000-119543800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:119532400-119551000	Weak transcription	Right Ventricle	heart
12	chr3:119533600-119537200	Strong transcription	Duodenum Mucosa	Duodenum
13	chr3:119534000-119544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:119534400-119537400	Strong transcription	Liver	Liver
15	chr3:119534600-119536800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr3:119534800-119558600	Weak transcription	Colonic Mucosa	Colon
17	chr3:119535000-119544200	Weak transcription	HepG2	liver
18	chr3:119535600-119536400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:119535600-119536400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:119535800-119536400	Enhancers	Left Ventricle	heart
21	chr3:119535800-119536600	Enhancers	HSMMtube	muscle
22	chr3:119535800-119536800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:119536000-119536200	Enhancers	Esophagus	oesophagus
24	chr3:119536000-119536200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr3:119536000-119536200	Enhancers	Fetal Muscle Leg	muscle
26	chr3:119536000-119536200	Bivalent Enhancer	Fetal Stomach	stomach
27	chr3:119536000-119536400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:119536000-119536400	Enhancers	HMEC	breast
29	chr3:119536000-119536600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:119536000-119537000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:119536000-119543200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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