Variant report

Variant	rs57265162
Chromosome Location	chr3:119587220-119587221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119586172..119587789-chr3:119594184..119596483,2	MCF-7	breast:
2	chr3:119576854..119579508-chr3:119585764..119588741,2	K562	blood:

Variant related genes	Relation type
ENSG00000082701	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1579030	1.00[ASN][1000 genomes]
rs1579032	1.00[ASN][1000 genomes]
rs3732358	1.00[ASN][1000 genomes]
rs57132942	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60675046	1.00[ASN][1000 genomes]
rs72548703	1.00[ASN][1000 genomes]
rs9849889	1.00[ASN][1000 genomes]
rs9853463	1.00[ASN][1000 genomes]
rs9872321	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119546000-119663400	Weak transcription	Lung	lung
2	chr3:119551400-119594600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:119561200-119591200	Weak transcription	Stomach Mucosa	stomach
4	chr3:119562400-119611000	Weak transcription	Fetal Stomach	stomach
5	chr3:119567000-119605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:119569400-119629400	Weak transcription	Esophagus	oesophagus
7	chr3:119574600-119631600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:119575000-119588000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:119577000-119598800	Weak transcription	Fetal Brain Male	brain
10	chr3:119577400-119596600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:119577600-119589400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:119577600-119598200	Weak transcription	Left Ventricle	heart
13	chr3:119577600-119602800	Weak transcription	Psoas Muscle	Psoas
14	chr3:119577600-119607600	Weak transcription	Aorta	Aorta
15	chr3:119577800-119607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:119578000-119601400	Weak transcription	Fetal Intestine Small	intestine
17	chr3:119581800-119605400	Weak transcription	Colonic Mucosa	Colon
18	chr3:119582400-119587400	Weak transcription	Brain Substantia Nigra	brain
19	chr3:119582400-119591800	Weak transcription	Placenta	Placenta
20	chr3:119582400-119593600	Weak transcription	Fetal Lung	lung
21	chr3:119582400-119596800	Weak transcription	Fetal Kidney	kidney
22	chr3:119582400-119598400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:119582400-119602200	Weak transcription	A549	lung
24	chr3:119582400-119607400	Weak transcription	Ovary	ovary
25	chr3:119582400-119607600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:119582400-119607600	Weak transcription	Fetal Brain Female	brain
27	chr3:119582400-119607600	Weak transcription	Thymus	Thymus
28	chr3:119582400-119607800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:119582400-119610600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr3:119582400-119610600	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:119582400-119611000	Weak transcription	Brain Anterior Caudate	brain
32	chr3:119582400-119611000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr3:119582400-119611000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:119582400-119611000	Weak transcription	HUVEC	blood vessel
35	chr3:119582400-119624000	Weak transcription	Brain Germinal Matrix	brain
36	chr3:119582400-119626600	Weak transcription	Fetal Heart	heart
37	chr3:119582400-119629400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:119582600-119592000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:119582600-119594400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:119582600-119594400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:119582600-119595000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:119582600-119595600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:119582600-119598400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:119582600-119598400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr3:119582600-119598800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:119582600-119599000	Weak transcription	NH-A	brain
47	chr3:119582600-119602000	Weak transcription	Hela-S3	cervix
48	chr3:119582600-119602400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:119582600-119602400	Weak transcription	Fetal Muscle Leg	muscle
50	chr3:119582600-119602400	Weak transcription	HSMMtube	muscle

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