Variant report

Variant	rs9867915
Chromosome Location	chr3:119722848-119722849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119721357..119723738-chr3:119814057..119815870,3	MCF-7	breast:
2	chr3:119709355..119712243-chr3:119721755..119723709,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1037974	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13314836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13322562	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17246730	1.00[ASN][1000 genomes]
rs17246737	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1903764	1.00[ASN][1000 genomes]
rs28821007	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34002644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3732358	1.00[JPT][hapmap]
rs3755556	1.00[JPT][hapmap]
rs4491944	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57027844	1.00[ASN][1000 genomes]
rs57132942	1.00[ASN][1000 genomes]
rs58299321	1.00[ASN][1000 genomes]
rs58371446	1.00[ASN][1000 genomes]
rs58991487	1.00[ASN][1000 genomes]
rs59368677	1.00[ASN][1000 genomes]
rs59703574	0.86[ASN][1000 genomes]
rs60049973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60325644	1.00[ASN][1000 genomes]
rs60993278	1.00[ASN][1000 genomes]
rs61188334	1.00[ASN][1000 genomes]
rs61511292	1.00[ASN][1000 genomes]
rs61566983	1.00[ASN][1000 genomes]
rs6796550	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs922337	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9812146	1.00[YRI][hapmap]
rs9812149	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9834346	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9843795	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9849889	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9853463	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9865193	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9872321	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119681200-119723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:119692400-119723200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:119693600-119732200	Weak transcription	A549	lung
4	chr3:119709200-119723000	Weak transcription	Spleen	Spleen
5	chr3:119710200-119730800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:119711400-119729200	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:119711800-119723200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:119712000-119723400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:119712000-119732200	Weak transcription	HepG2	liver
10	chr3:119712200-119723400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:119712200-119732400	Weak transcription	NHLF	lung
12	chr3:119712600-119745000	Weak transcription	Hela-S3	cervix
13	chr3:119712800-119723400	Weak transcription	Osteobl	bone
14	chr3:119712800-119732200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:119713200-119744400	Weak transcription	Fetal Kidney	kidney
16	chr3:119714400-119723000	Weak transcription	Fetal Brain Male	brain
17	chr3:119717400-119730200	Weak transcription	Brain Anterior Caudate	brain
18	chr3:119717600-119732200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:119718200-119736800	Weak transcription	Liver	Liver
20	chr3:119719000-119729800	Weak transcription	Brain Substantia Nigra	brain
21	chr3:119719600-119723400	Weak transcription	NHEK	skin
22	chr3:119719600-119730000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:119720000-119723200	Weak transcription	Dnd41	blood
24	chr3:119720200-119731800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:119720200-119736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:119720200-119741000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr3:119720400-119729600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:119720400-119730400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:119720400-119737200	Weak transcription	NHDF-Ad	bronchial
30	chr3:119720600-119723200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:119720800-119730200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:119720800-119738600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:119721000-119723000	Weak transcription	Primary B cells from cord blood	blood
34	chr3:119721000-119723200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:119721000-119724200	Weak transcription	Adipose Nuclei	Adipose
36	chr3:119721000-119724400	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr3:119721000-119731200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:119721000-119731200	Weak transcription	Fetal Lung	lung
39	chr3:119721200-119723200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:119721400-119733600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:119722000-119723400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:119722600-119723000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr3:119722600-119723000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr3:119722600-119723000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr3:119722600-119723000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr3:119722600-119723000	Enhancers	Ovary	ovary
47	chr3:119722600-119723200	Enhancers	Fetal Muscle Trunk	muscle
48	chr3:119722600-119723200	Enhancers	Pancreas	Pancrea
49	chr3:119722600-119723200	Enhancers	Psoas Muscle	Psoas
50	chr3:119722600-119723400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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