Variant report

Variant	rs9812146
Chromosome Location	chr3:119722676-119722677
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1037974	1.00[ASN][1000 genomes]
rs13314836	0.98[AFR][1000 genomes]
rs13322562	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1579030	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17246730	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17246737	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903764	1.00[ASN][1000 genomes]
rs28821007	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34002644	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4491944	1.00[ASN][1000 genomes]
rs57027844	1.00[ASN][1000 genomes]
rs57132942	1.00[ASN][1000 genomes]
rs58299321	1.00[ASN][1000 genomes]
rs58371446	1.00[ASN][1000 genomes]
rs58991487	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59368677	1.00[ASN][1000 genomes]
rs59703574	0.86[ASN][1000 genomes]
rs60049973	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60325644	1.00[ASN][1000 genomes]
rs60993278	1.00[ASN][1000 genomes]
rs61091679	1.00[EUR][1000 genomes]
rs61188334	1.00[ASN][1000 genomes]
rs61511292	1.00[ASN][1000 genomes]
rs61566983	1.00[ASN][1000 genomes]
rs6796550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72548703	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854776	1.00[EUR][1000 genomes]
rs73854793	1.00[EUR][1000 genomes]
rs922337	1.00[ASN][1000 genomes]
rs9812149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834346	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843795	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849889	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853463	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865193	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9867915	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9872321	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119681200-119723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:119692400-119723200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:119693600-119732200	Weak transcription	A549	lung
4	chr3:119700600-119722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:119709200-119723000	Weak transcription	Spleen	Spleen
6	chr3:119710200-119730800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:119710400-119722800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:119711400-119729200	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:119711800-119722800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:119711800-119723200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:119712000-119723400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:119712000-119732200	Weak transcription	HepG2	liver
13	chr3:119712200-119723400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:119712200-119732400	Weak transcription	NHLF	lung
15	chr3:119712400-119722800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:119712600-119745000	Weak transcription	Hela-S3	cervix
17	chr3:119712800-119722800	Weak transcription	Thymus	Thymus
18	chr3:119712800-119723400	Weak transcription	Osteobl	bone
19	chr3:119712800-119732200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:119713000-119722800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:119713200-119744400	Weak transcription	Fetal Kidney	kidney
22	chr3:119714400-119723000	Weak transcription	Fetal Brain Male	brain
23	chr3:119715600-119722800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:119717000-119722800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:119717400-119722800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:119717400-119722800	Weak transcription	Lung	lung
27	chr3:119717400-119722800	Weak transcription	Right Ventricle	heart
28	chr3:119717400-119730200	Weak transcription	Brain Anterior Caudate	brain
29	chr3:119717600-119722800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:119717600-119722800	Weak transcription	Fetal Intestine Small	intestine
31	chr3:119717600-119722800	Weak transcription	Placenta	Placenta
32	chr3:119717600-119732200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:119718200-119736800	Weak transcription	Liver	Liver
34	chr3:119719000-119729800	Weak transcription	Brain Substantia Nigra	brain
35	chr3:119719200-119722800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr3:119719400-119722800	Weak transcription	NH-A	brain
37	chr3:119719600-119723400	Weak transcription	NHEK	skin
38	chr3:119719600-119730000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:119720000-119723200	Weak transcription	Dnd41	blood
40	chr3:119720200-119722800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr3:119720200-119722800	Weak transcription	HSMM	muscle
42	chr3:119720200-119731800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:119720200-119736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:119720200-119741000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr3:119720400-119722800	Weak transcription	Primary T cells from cord blood	blood
46	chr3:119720400-119729600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr3:119720400-119730400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:119720400-119737200	Weak transcription	NHDF-Ad	bronchial
49	chr3:119720600-119722800	Weak transcription	HMEC	breast
50	chr3:119720600-119723200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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