Variant report

Variant	rs73854776
Chromosome Location	chr3:119807494-119807495
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119707707..119709811-chr3:119807417..119810335,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1579030	1.00[EUR][1000 genomes]
rs17246730	1.00[EUR][1000 genomes]
rs17246737	1.00[EUR][1000 genomes]
rs28821007	1.00[EUR][1000 genomes]
rs58991487	1.00[EUR][1000 genomes]
rs61091679	1.00[EUR][1000 genomes]
rs61454813	1.00[EUR][1000 genomes]
rs6796550	1.00[EUR][1000 genomes]
rs72548703	1.00[EUR][1000 genomes]
rs73854793	1.00[EUR][1000 genomes]
rs73856447	1.00[EUR][1000 genomes]
rs9812149	1.00[EUR][1000 genomes]
rs9834346	1.00[EUR][1000 genomes]
rs9843795	1.00[EUR][1000 genomes]
rs9849889	1.00[EUR][1000 genomes]
rs9853463	1.00[EUR][1000 genomes]
rs9872321	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv3964	chr3:119786623-119831698	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv829697	chr3:119802856-119918435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119764600-119812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:119771400-119809400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:119773200-119807600	Weak transcription	Right Ventricle	heart
4	chr3:119779600-119807800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:119780600-119807800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:119788400-119808600	Weak transcription	Primary B cells from cord blood	blood
7	chr3:119789400-119809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:119789800-119807800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:119790000-119807600	Weak transcription	Liver	Liver
10	chr3:119790600-119807800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:119790600-119809200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:119790800-119808000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:119790800-119809200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:119790800-119809400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:119791000-119809600	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:119797000-119807800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:119797200-119807600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:119797600-119808000	Weak transcription	NHLF	lung
19	chr3:119798000-119807600	Weak transcription	NHDF-Ad	bronchial
20	chr3:119798400-119807600	Weak transcription	Right Atrium	heart
21	chr3:119798400-119809400	Weak transcription	Lung	lung
22	chr3:119798600-119807600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:119798600-119807600	Weak transcription	Fetal Thymus	thymus
24	chr3:119798800-119807600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:119798800-119807800	Weak transcription	K562	blood
26	chr3:119799000-119807600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:119799000-119808000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr3:119799000-119810400	Weak transcription	Placenta	Placenta
29	chr3:119799200-119810600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:119799600-119807600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr3:119799800-119809400	Weak transcription	HSMM	muscle
32	chr3:119800000-119807600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr3:119800400-119807600	Weak transcription	Psoas Muscle	Psoas
34	chr3:119800600-119807600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:119801000-119807600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:119801000-119807600	Weak transcription	Brain Anterior Caudate	brain
37	chr3:119801000-119807600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:119802400-119807600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr3:119802400-119807600	Weak transcription	Left Ventricle	heart
40	chr3:119802800-119807800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:119804200-119809200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr3:119804600-119807600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr3:119804600-119812000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:119804600-119812000	Weak transcription	Pancreas	Pancrea
45	chr3:119804800-119809200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr3:119805200-119807800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr3:119805200-119809200	Weak transcription	NH-A	brain
48	chr3:119805400-119807800	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:119805400-119807800	Weak transcription	Fetal Heart	heart
50	chr3:119805400-119808000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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