Variant report

Variant	rs3732405
Chromosome Location	chr3:121135022-121135023
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:121134688..121138349-chr3:121139086..121141700,5	K562	blood:
2	chr3:121129952..121132930-chr3:121134868..121138546,3	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10934551	0.83[EUR][1000 genomes]
rs11705939	0.84[EUR][1000 genomes]
rs11707252	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11707354	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11708438	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11709726	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11711667	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11713643	0.86[EUR][1000 genomes]
rs11715085	0.82[ASN][1000 genomes]
rs11718918	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12233510	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12496163	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12632308	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12635218	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13076688	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13080007	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13081748	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13085365	0.81[EUR][1000 genomes]
rs13086811	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13095841	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13097659	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1381057	0.91[ASN][1000 genomes]
rs1381058	0.87[EUR][1000 genomes]
rs1381059	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1986730	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1987097	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1987098	0.91[ASN][1000 genomes]
rs2030531	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2126139	0.88[ASN][1000 genomes]
rs2126140	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2127024	0.91[ASN][1000 genomes]
rs2169300	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2331921	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28406368	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3218649	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3732406	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3772122	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3772124	0.81[ASN][1000 genomes]
rs3843345	0.86[EUR][1000 genomes]
rs3845860	0.81[ASN][1000 genomes]
rs3911713	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4107754	0.95[ASN][1000 genomes]
rs4346498	0.88[ASN][1000 genomes]
rs4555467	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4676722	0.84[EUR][1000 genomes]
rs524026	0.81[ASN][1000 genomes]
rs575913	0.81[ASN][1000 genomes]
rs61796944	0.89[ASN][1000 genomes]
rs6438624	0.86[AFR][1000 genomes]
rs6438625	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6438626	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6438630	0.91[ASN][1000 genomes]
rs6438631	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6438633	0.86[EUR][1000 genomes]
rs66922316	0.81[ASN][1000 genomes]
rs6765310	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6769377	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6778684	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6782025	0.91[ASN][1000 genomes]
rs6782033	0.91[ASN][1000 genomes]
rs6784324	0.84[ASN][1000 genomes]
rs6787048	0.88[ASN][1000 genomes]
rs6793029	0.88[ASN][1000 genomes]
rs6793252	0.81[ASN][1000 genomes]
rs6796068	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6797376	0.85[EUR][1000 genomes]
rs6798699	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6806191	0.91[ASN][1000 genomes]
rs693403	0.81[ASN][1000 genomes]
rs7609781	0.91[ASN][1000 genomes]
rs7613752	0.87[EUR][1000 genomes]
rs7614639	0.82[EUR][1000 genomes]
rs7615529	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7618570	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7621376	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7622897	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7627978	0.91[ASN][1000 genomes]
rs7632907	0.88[ASN][1000 genomes]
rs7634611	0.91[ASN][1000 genomes]
rs7644928	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7645027	0.85[EUR][1000 genomes]
rs7645544	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7645849	0.91[ASN][1000 genomes]
rs7645869	0.87[EUR][1000 genomes]
rs7650439	0.91[ASN][1000 genomes]
rs7650658	0.91[ASN][1000 genomes]
rs9849118	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv521397	chr3:120970900-121192350	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv829702	chr3:121045793-121227975	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv591398	chr3:121046468-121154193	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv591399	chr3:121046468-121160369	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv591400	chr3:121070299-121339354	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv591401	chr3:121094592-121160369	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121117400-121139400	Weak transcription	Ovary	ovary
2	chr3:121129200-121148800	Weak transcription	GM12878-XiMat	blood
3	chr3:121134200-121152600	Weak transcription	Hela-S3	cervix
4	chr3:121134600-121146400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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