Variant report

Variant	rs7650439
Chromosome Location	chr3:121108569-121108570
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs11705939	0.84[ASN][1000 genomes]
rs11707252	0.96[ASN][1000 genomes]
rs11707354	0.90[ASN][1000 genomes]
rs11708438	0.98[ASN][1000 genomes]
rs11709726	0.90[ASN][1000 genomes]
rs11713643	0.84[ASN][1000 genomes]
rs11715085	0.90[ASN][1000 genomes]
rs1191290	0.82[AMR][1000 genomes]
rs1191296	0.83[AMR][1000 genomes]
rs1191297	0.83[AMR][1000 genomes]
rs12233510	0.98[ASN][1000 genomes]
rs12634017	0.86[ASN][1000 genomes]
rs13076688	0.98[ASN][1000 genomes]
rs13081748	0.98[ASN][1000 genomes]
rs13086811	0.98[ASN][1000 genomes]
rs13095841	0.95[ASN][1000 genomes]
rs1381057	1.00[ASN][1000 genomes]
rs1381058	0.84[ASN][1000 genomes]
rs1397824	0.82[AMR][1000 genomes]
rs1511432	0.83[AMR][1000 genomes]
rs1588538	0.83[AMR][1000 genomes]
rs173087	0.83[AMR][1000 genomes]
rs1795404	0.83[AMR][1000 genomes]
rs1986730	0.98[ASN][1000 genomes]
rs1987097	0.98[ASN][1000 genomes]
rs1987098	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030531	0.98[ASN][1000 genomes]
rs2126139	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2126140	0.95[ASN][1000 genomes]
rs2127024	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127025	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2141658	0.83[AMR][1000 genomes]
rs2169300	0.98[ASN][1000 genomes]
rs2331921	0.95[ASN][1000 genomes]
rs234997	0.82[AMR][1000 genomes]
rs2656043	0.83[AMR][1000 genomes]
rs338958	0.83[AMR][1000 genomes]
rs338959	0.83[AMR][1000 genomes]
rs338969	0.83[AMR][1000 genomes]
rs338973	0.83[AMR][1000 genomes]
rs338981	0.83[AMR][1000 genomes]
rs338983	0.82[AMR][1000 genomes]
rs338994	0.83[AMR][1000 genomes]
rs338996	0.83[AMR][1000 genomes]
rs339000	0.83[AMR][1000 genomes]
rs339006	0.82[AMR][1000 genomes]
rs339011	0.82[AMR][1000 genomes]
rs3732405	0.91[ASN][1000 genomes]
rs3843345	0.84[ASN][1000 genomes]
rs4107754	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4346498	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4525804	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4676677	0.87[ASN][1000 genomes]
rs4676719	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4676722	0.83[ASN][1000 genomes]
rs524026	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs541818	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs575913	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61796944	0.98[ASN][1000 genomes]
rs6438625	0.98[ASN][1000 genomes]
rs6438626	0.95[ASN][1000 genomes]
rs6438630	1.00[ASN][1000 genomes]
rs6438631	0.90[ASN][1000 genomes]
rs6438633	0.84[ASN][1000 genomes]
rs6765310	0.98[ASN][1000 genomes]
rs6769377	0.98[ASN][1000 genomes]
rs6775865	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6782025	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782033	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784156	0.83[AMR][1000 genomes]
rs6787048	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6793029	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6796068	0.98[ASN][1000 genomes]
rs6797376	0.84[ASN][1000 genomes]
rs6798699	0.91[ASN][1000 genomes]
rs6806191	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7609781	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613752	0.84[ASN][1000 genomes]
rs7618570	0.98[ASN][1000 genomes]
rs7621376	0.98[ASN][1000 genomes]
rs7627978	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632907	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7634611	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644928	0.91[ASN][1000 genomes]
rs7645027	0.84[ASN][1000 genomes]
rs7645544	0.96[ASN][1000 genomes]
rs7645849	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645869	0.84[ASN][1000 genomes]
rs7650658	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849118	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv829701	chr3:120935402-121115932	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521397	chr3:120970900-121192350	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv829702	chr3:121045793-121227975	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv591398	chr3:121046468-121154193	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv591399	chr3:121046468-121160369	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv591400	chr3:121070299-121339354	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv591401	chr3:121094592-121160369	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121093000-121117000	Weak transcription	Ovary	ovary

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