Variant report

Variant	rs4525804
Chromosome Location	chr3:121120202-121120203
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1397824	0.81[AMR][1000 genomes]
rs1987098	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2126139	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2127024	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2127025	0.81[AMR][1000 genomes]
rs338983	0.81[AMR][1000 genomes]
rs339006	0.81[AMR][1000 genomes]
rs339011	0.81[AMR][1000 genomes]
rs4107754	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4346498	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4676719	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs488636	0.81[AMR][1000 genomes]
rs502643	0.81[AMR][1000 genomes]
rs524026	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs541818	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs575913	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6775865	0.81[AMR][1000 genomes]
rs6782025	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6782033	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6787048	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6793029	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6806191	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs693403	0.81[AMR][1000 genomes]
rs702019	0.81[AMR][1000 genomes]
rs7609781	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7627978	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7632907	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7634611	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7645849	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7650439	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7650658	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9849118	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv521397	chr3:120970900-121192350	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv829702	chr3:121045793-121227975	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv591398	chr3:121046468-121154193	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv591399	chr3:121046468-121160369	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv591400	chr3:121070299-121339354	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv591401	chr3:121094592-121160369	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121117400-121139400	Weak transcription	Ovary	ovary

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