Variant report

Variant	rs3734062
Chromosome Location	chr5:150948016-150948017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1549918	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033465	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2288777	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs60907456	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61351310	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998076	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20633	chr5:150941705-150955343	Strong transcription Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150934200-150949600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr5:150937000-150948600	Weak transcription	Right Atrium	heart
3	chr5:150937600-150948600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:150942600-150948400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:150944000-150948400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:150945400-150948400	Strong transcription	NHEK	skin
7	chr5:150946000-150948400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:150946000-150948800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:150947600-150948400	Genic enhancers	Esophagus	oesophagus
10	chr5:150948000-150948400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:150948000-150949600	Genic enhancers	HMEC	breast
12	chr5:150948000-150950200	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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