Variant report

Variant	rs3736858
Chromosome Location	chr13:76415379-76415380
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12427729	1.00[ASW][hapmap];0.92[CEU][hapmap];0.84[CHD][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12428617	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs12428746	0.84[CHB][hapmap];0.80[AMR][1000 genomes]
rs12430940	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17065074	0.85[ASN][1000 genomes]
rs17065145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120060	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.92[MKK][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2120061	1.00[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2165774	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2241913	0.85[ASN][1000 genomes]
rs2296093	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3759445	1.00[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3783025	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41287008	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4885357	0.84[CHB][hapmap];0.82[AMR][1000 genomes]
rs61959583	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs629443	0.83[ASN][1000 genomes]
rs9318380	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9530471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9544047	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9544049	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9544050	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9544051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9544053	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9544056	0.84[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9544059	1.00[ASW][hapmap];0.92[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76370400-76415600	Weak transcription	Primary B cells from cord blood	blood
2	chr13:76376800-76415400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr13:76377600-76415800	Weak transcription	Dnd41	blood
4	chr13:76377600-76416200	Weak transcription	A549	lung
5	chr13:76378200-76415800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr13:76378400-76415600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr13:76387800-76415800	Weak transcription	Brain Germinal Matrix	brain
8	chr13:76387800-76427200	Weak transcription	Ovary	ovary
9	chr13:76388800-76415400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:76391200-76418600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr13:76391200-76431600	Strong transcription	Hela-S3	cervix
12	chr13:76392400-76415600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:76393000-76416000	Weak transcription	Brain Angular Gyrus	brain
14	chr13:76393400-76415800	Weak transcription	Psoas Muscle	Psoas
15	chr13:76393600-76416000	Weak transcription	Fetal Lung	lung
16	chr13:76394200-76415400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr13:76394400-76435800	Weak transcription	Colon Smooth Muscle	Colon
18	chr13:76394800-76415800	Weak transcription	Adipose Nuclei	Adipose
19	chr13:76396400-76432000	Weak transcription	Brain Substantia Nigra	brain
20	chr13:76396400-76436800	Weak transcription	Fetal Brain Male	brain
21	chr13:76396800-76415600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr13:76396800-76416200	Weak transcription	Fetal Kidney	kidney
23	chr13:76398400-76415400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr13:76398400-76415600	Weak transcription	Brain Anterior Caudate	brain
25	chr13:76398400-76415600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr13:76399000-76433200	Weak transcription	Small Intestine	intestine
27	chr13:76399800-76433000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr13:76400800-76415800	Weak transcription	Fetal Stomach	stomach
29	chr13:76400800-76428400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr13:76401000-76415800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr13:76401000-76415800	Weak transcription	Lung	lung
32	chr13:76403600-76416200	Weak transcription	Fetal Heart	heart
33	chr13:76404800-76418400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr13:76406000-76415400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr13:76406000-76415600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr13:76406000-76415800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr13:76406000-76417000	Weak transcription	GM12878-XiMat	blood
38	chr13:76406000-76428600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr13:76406000-76429600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr13:76406000-76430600	Strong transcription	Osteobl	bone
41	chr13:76406000-76436800	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr13:76406600-76435000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr13:76406800-76427800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr13:76408400-76435000	Strong transcription	HSMMtube	muscle
45	chr13:76408400-76435200	Strong transcription	NH-A	brain
46	chr13:76409200-76417000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr13:76410200-76415800	Weak transcription	Spleen	Spleen
48	chr13:76410200-76419600	Strong transcription	Fetal Intestine Large	intestine
49	chr13:76410400-76417600	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr13:76410800-76417200	Weak transcription	H9 Cell Line	embryonic stem cell

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