Variant report

Variant	rs9318380
Chromosome Location	chr13:76435126-76435127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COMMD6-10	chr13:76434594-76435511	NONHSAT034374

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12427729	0.92[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12428617	0.92[JPT][hapmap]
rs12428746	0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs12430940	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17065145	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2120060	0.91[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2120061	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2165774	0.92[CEU][hapmap];0.92[CHB][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2296093	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3736858	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3759445	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3783025	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3825439	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs41287008	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4885357	0.92[CHB][hapmap];0.85[AMR][1000 genomes]
rs61959583	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9530471	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9544047	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9544049	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9544050	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9544051	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9544053	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9544056	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9544059	0.92[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76394400-76435800	Weak transcription	Colon Smooth Muscle	Colon
2	chr13:76396400-76436800	Weak transcription	Fetal Brain Male	brain
3	chr13:76406000-76436800	Strong transcription	Muscle Satellite Cultured Cells	--
4	chr13:76408400-76435200	Strong transcription	NH-A	brain
5	chr13:76413200-76436800	Strong transcription	NHDF-Ad	bronchial
6	chr13:76413800-76437600	Strong transcription	HSMM	muscle
7	chr13:76414400-76435200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:76417400-76443800	Weak transcription	Fetal Brain Female	brain
9	chr13:76417600-76436800	Weak transcription	Psoas Muscle	Psoas
10	chr13:76417600-76437800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:76417600-76444600	Weak transcription	HMEC	breast
12	chr13:76417800-76438800	Weak transcription	A549	lung
13	chr13:76424400-76444200	Weak transcription	Fetal Lung	lung
14	chr13:76427400-76440800	Weak transcription	Ovary	ovary
15	chr13:76428000-76435200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:76428000-76444600	Weak transcription	Fetal Kidney	kidney
17	chr13:76428000-76444800	Weak transcription	Esophagus	oesophagus
18	chr13:76428200-76437400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:76428200-76444400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:76428400-76444600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr13:76428400-76444600	Weak transcription	Fetal Heart	heart
22	chr13:76429600-76444600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr13:76429800-76435200	Weak transcription	Placenta	Placenta
24	chr13:76431000-76435800	Weak transcription	Fetal Stomach	stomach
25	chr13:76431000-76435800	Weak transcription	Fetal Thymus	thymus
26	chr13:76431000-76436800	Weak transcription	Gastric	stomach
27	chr13:76431000-76438400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr13:76431000-76444600	Weak transcription	Aorta	Aorta
29	chr13:76431200-76436600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:76431200-76436600	Weak transcription	Lung	lung
31	chr13:76431600-76435200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:76431600-76436400	Weak transcription	Colonic Mucosa	Colon
33	chr13:76431600-76437600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr13:76431600-76444600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr13:76431800-76436800	Weak transcription	Thymus	Thymus
36	chr13:76432000-76444600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr13:76432200-76436600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr13:76432200-76438000	Weak transcription	Left Ventricle	heart
39	chr13:76432200-76438800	Weak transcription	HepG2	liver
40	chr13:76432200-76443600	Weak transcription	Primary T cells from cord blood	blood
41	chr13:76432200-76444200	Weak transcription	GM12878-XiMat	blood
42	chr13:76432200-76444600	Weak transcription	Fetal Intestine Small	intestine
43	chr13:76432200-76444600	Weak transcription	Fetal Muscle Leg	muscle
44	chr13:76432200-76444600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr13:76432400-76437200	Weak transcription	Fetal Intestine Large	intestine
46	chr13:76432800-76435400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr13:76433000-76444400	Weak transcription	Liver	Liver
48	chr13:76433400-76444200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr13:76433800-76435600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:76434200-76437600	Weak transcription	Hela-S3	cervix

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