Variant report

Variant	rs3736886
Chromosome Location	chr6:147183108-147183109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147181856..147183431-chr6:147186533..147188498,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHPRH-2	chr6:147182942-147183155	ENSG00000233452
2	lnc-C6orf103-1	chr6:147183097-147183177	XLOC_005495
3	lnc-SHPRH-2	chr6:147181754-147183155	NONHSAT115432
4	lnc-SHPRH-2	chr6:147182943-147183155	NONHSAT115441
5	lnc-C6orf103-1	chr6:147182992-147183177	NONHSAT115442

No data

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10457058	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10457059	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10872590	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11967903	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12190780	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12190795	0.86[CEU][hapmap]
rs12191031	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12191074	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12192109	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12192840	0.86[CEU][hapmap]
rs12193933	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12194244	0.86[CEU][hapmap]
rs12196674	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12203958	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205535	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12206264	0.82[EUR][1000 genomes]
rs12206612	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12208399	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12208632	0.81[CEU][hapmap]
rs12211372	0.81[CEU][hapmap]
rs12211458	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12213086	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12216213	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs259368	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs259387	0.85[CHB][hapmap]
rs35064671	0.90[EUR][1000 genomes]
rs41285877	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs508146	0.93[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58441910	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434408	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434410	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434412	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434418	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434419	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434421	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434422	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434423	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434425	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434426	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434427	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6909070	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6922552	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6929822	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73578231	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7747334	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7770567	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs878617	0.86[CEU][hapmap]
rs9497651	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497652	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497653	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497654	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147179000-147186000	Weak transcription	Esophagus	oesophagus
2	chr6:147179400-147183800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:147179600-147184800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:147179600-147185000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:147179600-147192200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:147181200-147184400	Enhancers	Liver	Liver
7	chr6:147181600-147183400	Enhancers	Brain Angular Gyrus	brain
8	chr6:147181800-147183800	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:147182000-147186000	Weak transcription	NHLF	lung
10	chr6:147182200-147183600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
12	chr6:147182400-147183200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:147182800-147193000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:147183000-147184200	Enhancers	Brain Substantia Nigra	brain
15	chr6:147183000-147187200	Enhancers	K562	blood

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