Variant report

Variant	rs878617
Chromosome Location	chr6:147203404-147203405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457058	0.93[CEU][hapmap]
rs10457059	0.92[CEU][hapmap]
rs12190780	0.92[CEU][hapmap]
rs12190795	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12191031	0.92[CEU][hapmap]
rs12192840	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12194244	1.00[CEU][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs12194773	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12205166	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12208399	0.93[CEU][hapmap]
rs12208632	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12211372	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211724	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12211839	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12215283	1.00[CEU][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs508146	0.93[CEU][hapmap]
rs62434807	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62434828	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62434830	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62434833	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs878616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497651	0.93[CEU][hapmap]
rs9497653	0.92[CEU][hapmap]
rs9497654	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147198200-147203600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:147198200-147205600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:147200000-147205600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:147200200-147204800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:147200200-147205000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:147200200-147205400	Weak transcription	Liver	Liver
7	chr6:147200200-147208600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:147200400-147204800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:147200400-147205000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:147200800-147205000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:147201200-147208000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:147201400-147205000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:147202200-147212400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:147202800-147205000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:147203200-147204600	Enhancers	K562	blood
16	chr6:147203200-147212000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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