Variant report

Variant	rs62434830
Chromosome Location	chr6:147192394-147192395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12190795	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192840	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194244	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12194773	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12205166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12208632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211724	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211839	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434807	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62434828	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434833	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs878616	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
2	chr6:147182800-147193000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:147186400-147192800	Weak transcription	Esophagus	oesophagus
4	chr6:147189800-147196400	Enhancers	K562	blood
5	chr6:147190200-147192800	Weak transcription	HepG2	liver
6	chr6:147190400-147193000	Weak transcription	Liver	Liver
7	chr6:147191200-147193400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:147191600-147192400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:147192000-147192400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:147192000-147192400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:147192000-147192400	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:147192000-147192400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:147192000-147192600	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:147192000-147192600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:147192200-147192400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr6:147192200-147192600	Enhancers	GM12878-XiMat	blood
17	chr6:147192200-147193000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:147192200-147193400	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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