Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:147217369..147219463-chr6:147527173..147529417,2	K562	blood:
2	chr6:147218917..147220717-chr6:147520720..147523033,2	K562	blood:
3	chr6:147217791..147220751-chr6:147534803..147537147,3	K562	blood:
4	chr6:147218209..147220356-chr6:147630497..147633401,2	K562	blood:
5	chr6:147217069..147220905-chr6:147535647..147540121,4	K562	blood:
6	chr6:147218096..147220115-chr6:147523787..147525922,3	K562	blood:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457058	0.93[CEU][hapmap]
rs10457059	0.92[CEU][hapmap]
rs12190780	0.92[CEU][hapmap]
rs12190795	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12191031	0.92[CEU][hapmap]
rs12192840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12194773	0.92[EUR][1000 genomes]
rs12205166	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12208399	0.93[CEU][hapmap];0.82[TSI][hapmap]
rs12208632	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12211372	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211724	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211839	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12215283	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs508146	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs62434807	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62434828	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62434830	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62434833	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs878616	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs878617	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs9497651	0.93[CEU][hapmap]
rs9497653	0.92[CEU][hapmap]
rs9497654	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv442012	chr6:147210681-147219817	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147215200-147219600	Flanking Active TSS	K562	blood
2	chr6:147215200-147224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:147216000-147224600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:147216800-147220000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:147217000-147220400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:147217000-147220400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:147217400-147220600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:147218000-147225800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:147218200-147226600	Weak transcription	NHLF	lung
10	chr6:147219200-147219800	Enhancers	Primary hematopoietic stem cells	blood

Quick Search: