Variant report

Variant	rs12194773
Chromosome Location	chr6:147205125-147205126
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12190795	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12192840	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12194244	0.92[EUR][1000 genomes]
rs12205166	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12208632	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12211372	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211724	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12211839	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12215283	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62434807	0.89[EUR][1000 genomes]
rs62434828	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62434830	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62434833	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs878616	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147198200-147205600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:147200000-147205600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:147200200-147205400	Weak transcription	Liver	Liver
4	chr6:147200200-147208600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:147201200-147208000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:147202200-147212400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:147203200-147212000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:147204600-147206000	Flanking Active TSS	K562	blood
9	chr6:147204800-147206200	Enhancers	Fetal Intestine Small	intestine
10	chr6:147204800-147207400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:147205000-147205200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:147205000-147205200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr6:147205000-147205400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
14	chr6:147205000-147205600	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:147205000-147207600	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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