Variant report

Variant	rs12215283
Chromosome Location	chr6:147195422-147195423
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147188602..147191328-chr6:147193777..147196284,2	MCF-7	breast:
2	chr6:147192590..147195458-chr6:147524858..147526630,2	K562	blood:
3	chr6:146125227..146127390-chr6:147195010..147197775,2	K562	blood:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457058	0.92[CEU][hapmap]
rs10457059	0.84[CEU][hapmap]
rs12190780	0.85[CEU][hapmap]
rs12190795	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12191031	0.85[CEU][hapmap]
rs12192840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194244	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12194773	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12205166	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12208399	0.92[CEU][hapmap]
rs12208632	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211372	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211724	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211839	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508146	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs62434807	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62434828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434830	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs878616	1.00[CEU][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs878617	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs9497651	0.92[CEU][hapmap]
rs9497653	0.85[CEU][hapmap]
rs9497654	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
2	chr6:147189800-147196400	Enhancers	K562	blood
3	chr6:147192400-147195800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:147192400-147196600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:147192400-147197000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:147192400-147197400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:147192600-147196000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:147192600-147196800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:147193000-147200800	Weak transcription	Esophagus	oesophagus
10	chr6:147193400-147195600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:147193400-147195800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:147193400-147198600	Weak transcription	Liver	Liver
13	chr6:147193600-147197600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:147193600-147199600	Weak transcription	NHDF-Ad	bronchial
15	chr6:147194000-147197000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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