Variant report

Variant rs373920248
Chromosome Location chr9:534882-534883
allele -/TTTAA
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:520600-535000 Weak transcription Gastric stomach
2 chr9:523800-535000 Weak transcription Lung lung
3 chr9:526400-535000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr9:527600-535000 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr9:528000-537400 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr9:530000-535000 Weak transcription Ovary ovary
7 chr9:530600-535200 Enhancers Brain Cingulate Gyrus brain
8 chr9:530800-535200 Enhancers Brain Inferior Temporal Lobe brain
9 chr9:530800-538400 Enhancers Breast Myoepithelial Primary Cells Breast
10 chr9:531200-538000 Enhancers Brain Anterior Caudate brain
11 chr9:531400-535000 Weak transcription Left Ventricle heart
12 chr9:531400-535200 Weak transcription Stomach Smooth Muscle stomach
13 chr9:531400-546400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr9:531600-535000 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr9:531600-535800 Enhancers Brain Angular Gyrus brain
16 chr9:531800-535400 Enhancers Fetal Lung lung
17 chr9:532000-535000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr9:532000-535200 Weak transcription Aorta Aorta
19 chr9:532000-535200 Enhancers Fetal Heart heart
20 chr9:532000-535200 Weak transcription Right Ventricle heart
21 chr9:532000-538600 Enhancers Fetal Muscle Leg muscle
22 chr9:532400-535600 Enhancers Fetal Intestine Large intestine
23 chr9:532400-538400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
24 chr9:532600-535400 Enhancers Fetal Intestine Small intestine
25 chr9:532800-535600 Enhancers HUES48 Cell Line embryonic stem cell
26 chr9:532800-535600 Enhancers Duodenum Mucosa Duodenum
27 chr9:532800-538400 Enhancers Cortex derived primary cultured neurospheres brain
28 chr9:533000-535800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr9:533200-537000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr9:533400-536800 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr9:533400-537000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr9:533400-540000 Weak transcription A549 lung
33 chr9:533600-535000 Weak transcription Rectal Smooth Muscle rectum
34 chr9:533600-536000 Enhancers HMEC breast
35 chr9:533800-535000 Weak transcription Esophagus oesophagus
36 chr9:533800-535000 Weak transcription Pancreas Pancrea
37 chr9:534000-535000 Weak transcription H1 Cell Line embryonic stem cell
38 chr9:534000-535000 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr9:534000-535000 Weak transcription Small Intestine intestine
40 chr9:534000-535200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr9:534000-536000 Enhancers iPS-18 Cell Line embryonic stem cell
42 chr9:534200-535200 Weak transcription iPS-20b Cell Line embryonic stem cell
43 chr9:534400-535200 Enhancers Placenta Amnion Placenta Amnion
44 chr9:534400-535400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
45 chr9:534400-535800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
46 chr9:534400-537000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr9:534600-535000 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr9:534600-535200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr9:534600-535200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
50 chr9:534600-535600 Flanking Active TSS Brain Hippocampus Middle brain

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