Variant report

Variant	rs3741007
Chromosome Location	chr11:86123357-86123358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86117387..86119595-chr11:86121640..86124123,2	K562	blood:
2	chr11:86118884..86121555-chr11:86121901..86123435,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1042780	0.93[CHB][hapmap];0.95[CHD][hapmap]
rs10501617	0.93[CHB][hapmap];0.97[CHD][hapmap]
rs10501618	0.93[CHB][hapmap]
rs11234640	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234649	0.81[ASN][1000 genomes]
rs11234656	0.81[ASN][1000 genomes]
rs11607319	0.81[ASN][1000 genomes]
rs12272337	0.81[ASN][1000 genomes]
rs12272824	0.81[ASN][1000 genomes]
rs12274297	0.81[ASN][1000 genomes]
rs12289721	0.81[ASN][1000 genomes]
rs1452133	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1452135	0.81[ASN][1000 genomes]
rs1452138	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1597792	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs1839940	0.81[ASN][1000 genomes]
rs2034622	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3741006	0.93[CHB][hapmap];0.97[CHD][hapmap];0.81[ASN][1000 genomes]
rs3819227	0.93[CHB][hapmap]
rs3824954	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4586193	0.81[ASN][1000 genomes]
rs4944572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944573	0.81[ASN][1000 genomes]
rs4944574	0.93[CHB][hapmap];0.97[CHD][hapmap];0.81[ASN][1000 genomes]
rs59419027	0.81[ASN][1000 genomes]
rs6592293	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7926796	0.81[ASN][1000 genomes]
rs7930223	0.81[ASN][1000 genomes]
rs7947323	0.83[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.87[LWK][hapmap];0.99[MKK][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7947537	0.81[ASN][1000 genomes]
rs7949910	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3741007	NOX4	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108200-86127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:86111200-86124200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
6	chr11:86118200-86124800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
11	chr11:86119000-86126200	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:86119000-86127200	Weak transcription	Gastric	stomach
13	chr11:86119200-86125800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:86120600-86124000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:86121200-86127600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:86122000-86124600	Weak transcription	NHEK	skin
19	chr11:86122400-86124600	Strong transcription	Aorta	Aorta
20	chr11:86122600-86125200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:86122600-86133400	Weak transcription	Ovary	ovary

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