Variant report

Variant	rs7926796
Chromosome Location	chr11:86150469-86150470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86145611..86147254-chr11:86150298..86151883,2	K562	blood:
2	chr11:45827843..45829820-chr11:86147830..86150732,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1042780	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10501617	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10501618	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11234640	0.81[ASN][1000 genomes]
rs11234642	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11234649	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607319	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271571	0.99[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12272337	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272824	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289721	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452133	0.94[ASN][1000 genomes]
rs1452135	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452138	0.94[ASN][1000 genomes]
rs1597792	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839940	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2034622	0.94[ASN][1000 genomes]
rs28436284	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3741006	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741007	0.81[ASN][1000 genomes]
rs3819227	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3824954	0.94[ASN][1000 genomes]
rs4586193	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943940	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944573	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944574	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944576	0.84[EUR][1000 genomes]
rs4944578	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55734103	0.83[EUR][1000 genomes]
rs59419027	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592293	0.93[ASN][1000 genomes]
rs7120275	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7548	0.83[EUR][1000 genomes]
rs7930223	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932498	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7932514	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937668	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7947323	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947537	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9795296	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:86136800-86170200	Weak transcription	Fetal Heart	heart
3	chr11:86138600-86167400	Weak transcription	Fetal Lung	lung
4	chr11:86140800-86153400	Weak transcription	Right Ventricle	heart
5	chr11:86140800-86155800	Weak transcription	Psoas Muscle	Psoas
6	chr11:86141000-86153400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:86142000-86151400	Weak transcription	Adipose Nuclei	Adipose
8	chr11:86142000-86153600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:86142000-86167400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:86142400-86151200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:86142600-86151200	Weak transcription	Fetal Stomach	stomach
12	chr11:86142600-86153400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:86142600-86155000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:86142600-86156000	Weak transcription	Spleen	Spleen
15	chr11:86142800-86151000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:86142800-86152000	Weak transcription	Brain Germinal Matrix	brain
17	chr11:86142800-86157600	Weak transcription	Gastric	stomach
18	chr11:86143000-86153400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:86143400-86151400	Weak transcription	NH-A	brain
20	chr11:86143600-86151000	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:86143600-86151000	Weak transcription	Left Ventricle	heart
22	chr11:86143600-86151400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:86143600-86153600	Weak transcription	Fetal Intestine Small	intestine
24	chr11:86143800-86151200	Weak transcription	Fetal Brain Female	brain
25	chr11:86145000-86151400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:86145200-86150600	Weak transcription	Ovary	ovary
27	chr11:86145200-86151600	Weak transcription	Fetal Brain Male	brain
28	chr11:86145200-86153200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:86145400-86167400	Weak transcription	Pancreas	Pancrea
30	chr11:86145800-86152400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:86146000-86151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:86147000-86151200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:86147200-86150600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:86147200-86153600	Weak transcription	Aorta	Aorta
35	chr11:86147200-86153800	Weak transcription	Lung	lung
36	chr11:86148200-86154600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:86149000-86151000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:86149200-86154400	Weak transcription	Fetal Intestine Large	intestine
39	chr11:86149400-86151000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:86149400-86154800	Enhancers	NHDF-Ad	bronchial
41	chr11:86149800-86150800	Enhancers	K562	blood
42	chr11:86149800-86151200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:86149800-86151200	Enhancers	Osteobl	bone
44	chr11:86149800-86152200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:86149800-86158600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:86150000-86151800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:86150200-86151000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:86150200-86151200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:86150200-86151400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:86150200-86156200	Weak transcription	Colon Smooth Muscle	Colon

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