Variant report

Variant	rs3742567
Chromosome Location	chr14:55729755-55729756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55708908..55710762-chr14:55729314..55730925,2	K562	blood:
2	chr14:55728321..55735089-chr14:55735819..55739586,10	K562	blood:
3	chr14:55727113..55735518-chr14:55736186..55741884,14	K562	blood:
4	chr14:55728719..55731399-chr14:55736825..55739214,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLGAP5-4	chr14:55729485-55729874	ENSG00000258413
2	lnc-DLGAP5-4	chr14:55729626-55729874	ENSG00000258413
3	lnc-DLGAP5-4	chr14:55729488-55729874	NONHSAT036996

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10129161	0.84[ASN][1000 genomes]
rs10132875	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10133915	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs10134838	0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap]
rs10135156	1.00[MEX][hapmap]
rs10136880	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap]
rs10138026	0.82[ASW][hapmap]
rs10138259	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10138395	0.82[ASW][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap]
rs10140409	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10498473	1.00[MEX][hapmap]
rs13379052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17128417	1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs1971474	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2879891	0.82[YRI][hapmap]
rs6573008	0.81[JPT][hapmap]
rs7159490	0.81[JPT][hapmap]
rs8009660	0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs9323280	1.00[CHB][hapmap];0.87[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55729600-55730200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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