Variant report

Variant	rs10135156
Chromosome Location	chr14:55570529-55570530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55559803..55562181-chr14:55568621..55570852,2	K562	blood:
2	chr14:55568677..55571661-chr14:55571922..55577835,5	K562	blood:
3	chr14:55536490..55539101-chr14:55568903..55571706,2	K562	blood:
4	chr14:55568628..55573010-chr14:55614277..55618489,4	K562	blood:
5	chr14:55570137..55572731-chr14:55581864..55585022,3	MCF-7	breast:
6	chr14:55568626..55570818-chr14:55578433..55580001,2	K562	blood:
7	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
8	chr14:55569932..55572391-chr14:55657772..55659443,2	K562	blood:
9	chr14:55568925..55571630-chr14:55613554..55616278,2	MCF-7	breast:
10	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
11	chr14:55517323..55520297-chr14:55568628..55571698,4	K562	blood:
12	chr14:55570108..55572293-chr14:55641654..55643309,2	K562	blood:
13	chr14:55569822..55570936-chr14:55588765..55589799,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction
ENSG00000131981	Chromatin interaction
ENSG00000126787	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10133915	1.00[CEU][hapmap]
rs10136880	1.00[CEU][hapmap]
rs10138259	1.00[MEX][hapmap]
rs10138286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138550	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10498473	0.83[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2340932	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs28379289	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2879891	1.00[CEU][hapmap]
rs3742567	1.00[MEX][hapmap]
rs7157520	1.00[EUR][1000 genomes]
rs7157768	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs8009660	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs8019707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021306	1.00[CEU][hapmap]
rs8022890	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55565200-55570600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55566400-55570600	Enhancers	Fetal Lung	lung
3	chr14:55566400-55570800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:55566400-55570800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:55566600-55571600	Enhancers	Left Ventricle	heart
6	chr14:55566600-55571600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr14:55566600-55571800	Enhancers	Small Intestine	intestine
8	chr14:55567200-55571400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr14:55567600-55570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:55567600-55571600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:55567800-55570800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:55567800-55571000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr14:55567800-55571000	Enhancers	Pancreas	Pancrea
14	chr14:55567800-55571600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:55568000-55572200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr14:55568400-55570600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:55568400-55570800	Enhancers	Fetal Muscle Leg	muscle
18	chr14:55568400-55571000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:55568400-55571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:55568400-55571600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:55568400-55571600	Enhancers	Right Atrium	heart
22	chr14:55568600-55570600	Enhancers	Brain Substantia Nigra	brain
23	chr14:55568600-55570600	Flanking Active TSS	A549	lung
24	chr14:55568600-55570800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr14:55568600-55571000	Enhancers	Fetal Stomach	stomach
26	chr14:55568600-55571000	Enhancers	Psoas Muscle	Psoas
27	chr14:55568600-55571200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr14:55568600-55571200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr14:55568600-55571200	Enhancers	Fetal Heart	heart
30	chr14:55568600-55571400	Enhancers	Primary B cells from peripheral blood	blood
31	chr14:55568600-55571400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr14:55568600-55571400	Enhancers	Brain Hippocampus Middle	brain
33	chr14:55568600-55571600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr14:55568600-55571600	Enhancers	Placenta	Placenta
35	chr14:55568600-55571600	Enhancers	Fetal Thymus	thymus
36	chr14:55568600-55571600	Enhancers	Placenta Amnion	Placenta Amnion
37	chr14:55568600-55571600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr14:55568600-55571600	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr14:55568600-55571600	Enhancers	Spleen	Spleen
40	chr14:55568600-55576000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr14:55568600-55576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr14:55568800-55570600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:55568800-55570600	Enhancers	Primary T cells from cord blood	blood
44	chr14:55568800-55570600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr14:55568800-55570800	Flanking Active TSS	Hela-S3	cervix
46	chr14:55568800-55571000	Enhancers	H1 Cell Line	embryonic stem cell
47	chr14:55568800-55571000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:55568800-55571000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr14:55568800-55571000	Enhancers	Thymus	Thymus
50	chr14:55568800-55571200	Enhancers	Primary B cells from cord blood	blood

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