Variant report

Variant	rs2879891
Chromosome Location	chr14:55660390-55660391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55657821..55660879-chr14:55735073..55739609,4	K562	blood:
2	chr14:55658532..55660880-chr14:55663249..55664893,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10129161	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10132875	1.00[EUR][1000 genomes]
rs10133915	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135156	1.00[CEU][hapmap]
rs10136880	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10138259	0.82[YRI][hapmap]
rs10138286	1.00[CEU][hapmap]
rs10138395	0.80[JPT][hapmap]
rs10138550	0.87[AMR][1000 genomes]
rs10140881	0.83[ASN][1000 genomes]
rs10141323	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10498473	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs11844443	0.86[ASN][1000 genomes]
rs17128417	0.80[JPT][hapmap]
rs1971474	1.00[EUR][1000 genomes]
rs2296490	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2340932	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2340935	1.00[ASN][1000 genomes]
rs28379289	0.88[AMR][1000 genomes]
rs28405981	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28547246	0.82[ASN][1000 genomes]
rs28676392	0.86[ASN][1000 genomes]
rs3742567	0.82[YRI][hapmap]
rs3759668	1.00[EUR][1000 genomes]
rs6573008	0.86[ASN][1000 genomes]
rs6650507	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7151339	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7157520	0.88[AMR][1000 genomes]
rs7157768	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159490	0.86[ASN][1000 genomes]
rs73271796	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73273623	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8003961	0.86[ASN][1000 genomes]
rs8009660	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012105	0.86[ASN][1000 genomes]
rs8017256	0.86[ASN][1000 genomes]
rs8019707	1.00[CEU][hapmap]
rs8021306	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs8022890	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55658800-55660800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:55658800-55662200	Weak transcription	Aorta	Aorta
3	chr14:55658800-55662400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55659000-55660600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:55659000-55661400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:55659000-55661400	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:55659000-55661600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:55659000-55661800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:55659000-55661800	Weak transcription	HSMMtube	muscle
10	chr14:55659000-55662200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:55659000-55662400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:55659000-55663200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:55659200-55660600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:55659200-55662000	Weak transcription	HepG2	liver
15	chr14:55659200-55662200	Weak transcription	Brain Germinal Matrix	brain
16	chr14:55659200-55668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:55659400-55660600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:55659800-55660800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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