Variant report

Variant	rs6650507
Chromosome Location	chr14:55636438-55636439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55634555..55636876-chr14:55655010..55657376,2	K562	blood:
2	chr14:55608188..55610123-chr14:55635183..55636892,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10129161	1.00[EUR][1000 genomes]
rs10132875	1.00[EUR][1000 genomes]
rs10133915	0.93[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10134838	0.87[JPT][hapmap]
rs10136880	0.92[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs10138259	0.81[JPT][hapmap]
rs10138286	0.82[JPT][hapmap]
rs10138395	0.88[JPT][hapmap]
rs10138550	0.88[AMR][1000 genomes]
rs10140881	0.95[ASN][1000 genomes]
rs10141323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10498473	0.88[JPT][hapmap];0.88[AMR][1000 genomes]
rs11844443	0.98[ASN][1000 genomes]
rs13379052	0.82[JPT][hapmap]
rs17128417	0.88[JPT][hapmap]
rs1971474	1.00[EUR][1000 genomes]
rs2296490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2340932	0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2340935	0.88[ASN][1000 genomes]
rs28379289	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28405981	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28547246	0.94[ASN][1000 genomes]
rs28676392	0.98[ASN][1000 genomes]
rs2879891	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3742567	0.81[JPT][hapmap]
rs3759668	1.00[EUR][1000 genomes]
rs6573008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7151339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7157520	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157768	0.88[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7159490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs73271796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273623	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003961	0.98[ASN][1000 genomes]
rs8009660	0.92[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8012105	0.98[ASN][1000 genomes]
rs8017256	0.98[ASN][1000 genomes]
rs8019707	0.81[JPT][hapmap]
rs8021306	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8022890	0.88[AMR][1000 genomes]
rs9323280	0.83[JPT][hapmap]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
4	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:55610600-55655600	Strong transcription	Dnd41	blood
12	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
14	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:55612400-55637400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:55613400-55639200	Weak transcription	Fetal Intestine Small	intestine
18	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:55619200-55646800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:55619600-55643800	Weak transcription	NHDF-Ad	bronchial
21	chr14:55619800-55647400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:55621400-55643800	Weak transcription	NH-A	brain
23	chr14:55621800-55646200	Weak transcription	NHEK	skin
24	chr14:55622600-55649000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr14:55623600-55657000	Weak transcription	Fetal Muscle Leg	muscle
26	chr14:55624000-55637800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr14:55624800-55644200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr14:55625000-55638000	Weak transcription	Fetal Intestine Large	intestine
29	chr14:55629000-55650400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr14:55629200-55639000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:55629200-55655600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:55629400-55650600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr14:55629400-55652000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr14:55630200-55656600	Weak transcription	Fetal Brain Female	brain
35	chr14:55631000-55637200	Weak transcription	Fetal Lung	lung
36	chr14:55631000-55637800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr14:55631200-55645800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr14:55631200-55649400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:55631200-55650400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:55632400-55656200	Weak transcription	HSMM	muscle
41	chr14:55632600-55646800	Weak transcription	Osteobl	bone
42	chr14:55632600-55647000	Weak transcription	NHLF	lung
43	chr14:55633600-55636800	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr14:55634200-55636600	Strong transcription	HMEC	breast
45	chr14:55634200-55655400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr14:55634400-55638800	Weak transcription	Fetal Stomach	stomach
47	chr14:55634400-55639800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr14:55634400-55640200	Strong transcription	Hela-S3	cervix
49	chr14:55634400-55656200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr14:55634600-55636600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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