Variant report

Variant	rs7157520
Chromosome Location	chr14:55588768-55588769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr14:55588623-55590072	MCF-7	breast:	n/a	chr14:55589559-55589575 chr14:55589563-55589572
2	HDAC2	chr14:55588733-55590237	MCF-7	breast:	n/a	n/a
3	NR2F2	chr14:55588556-55589821	MCF-7	breast:	n/a	chr14:55589009-55589024
4	NR2F2	chr14:55588717-55589293	HepG2	liver:	n/a	chr14:55589009-55589024
5	JUND	chr14:55588674-55589864	MCF-7	breast:	n/a	n/a
6	SIN3AK20	chr14:55588532-55590065	MCF-7	breast:	n/a	n/a
7	NR2F2	chr14:55588743-55589651	HepG2	liver:	n/a	chr14:55589009-55589024
8	CEBPB	chr14:55588616-55589752	MCF-7	breast:	n/a	n/a
9	HDAC2	chr14:55588765-55589183	HepG2	liver:	n/a	n/a
10	NR2F2	chr14:55588565-55590020	MCF-7	breast:	n/a	chr14:55589009-55589024
11	GATA1	chr14:55588453-55589949	PBDE	blood:	n/a	chr14:55589559-55589575 chr14:55589563-55589572
12	MAX	chr14:55588749-55589856	MCF-7	breast:	n/a	n/a
13	RCOR1	chr14:55588766-55589968	Hela-S3	cervix:	n/a	n/a
14	GATA3	chr14:55588517-55590049	MCF-7	breast:	n/a	chr14:55589559-55589575 chr14:55589563-55589572
15	CEBPB	chr14:55588681-55590156	MCF-7	breast:	n/a	n/a
16	FOXM1	chr14:55588621-55589954	MCF-7	breast:	n/a	n/a
17	MAX	chr14:55588486-55590278	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:55587248..55591020-chr14:55595215..55599629,4	K562	blood:
2	chr14:55573563..55575807-chr14:55587577..55589248,2	K562	blood:
3	chr14:55587788..55590577-chr14:55878796..55880823,2	MCF-7	breast:
4	chr14:55569822..55570936-chr14:55588765..55589799,3	MCF-7	breast:
5	chr14:55368169..55370220-chr14:55588328..55589829,2	MCF-7	breast:
6	chr14:55518203..55519999-chr14:55586386..55590002,3	MCF-7	breast:

Variant related genes	Relation type
LGALS3	TF binding region
ENSG00000131981	Chromatin interaction
ENSG00000239199	Chromatin interaction
ENSG00000168175	Chromatin interaction
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10133915	0.88[AMR][1000 genomes]
rs10135156	1.00[EUR][1000 genomes]
rs10138286	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10138550	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10141323	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10498473	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11844443	0.80[ASN][1000 genomes]
rs2296490	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2340932	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28379289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28405981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28547246	0.84[ASN][1000 genomes]
rs28676392	0.80[ASN][1000 genomes]
rs2879891	0.88[AMR][1000 genomes]
rs6573008	0.80[ASN][1000 genomes]
rs6650507	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151339	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7157768	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7159490	0.80[ASN][1000 genomes]
rs73271796	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273623	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003961	0.80[ASN][1000 genomes]
rs8009660	0.88[AMR][1000 genomes]
rs8012105	0.80[ASN][1000 genomes]
rs8017256	0.80[ASN][1000 genomes]
rs8019707	1.00[EUR][1000 genomes]
rs8021306	0.81[AMR][1000 genomes]
rs8022890	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55575000-55589600	Weak transcription	Small Intestine	intestine
3	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
4	chr14:55580200-55589000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:55582200-55595600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:55582400-55589000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:55583600-55588800	Weak transcription	Fetal Kidney	kidney
8	chr14:55583800-55589200	Weak transcription	Lung	lung
9	chr14:55583800-55589200	Weak transcription	Pancreas	Pancrea
10	chr14:55583800-55591600	Weak transcription	Gastric	stomach
11	chr14:55584400-55589800	Enhancers	Colonic Mucosa	Colon
12	chr14:55584600-55592600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr14:55585000-55589000	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:55585000-55589400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:55585000-55591800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:55585200-55588800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:55585200-55589000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:55585200-55589200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:55585200-55589200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:55585400-55588800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:55585400-55589000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:55585400-55589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr14:55585400-55589000	Weak transcription	NH-A	brain
24	chr14:55585400-55589000	Weak transcription	NHDF-Ad	bronchial
25	chr14:55585400-55589200	Weak transcription	HMEC	breast
26	chr14:55585400-55589200	Weak transcription	HSMM	muscle
27	chr14:55585600-55588800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:55585600-55589000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr14:55585600-55589000	Weak transcription	HSMMtube	muscle
30	chr14:55585600-55589000	Weak transcription	Osteobl	bone
31	chr14:55585600-55589200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:55585600-55589200	Weak transcription	Fetal Thymus	thymus
33	chr14:55585600-55591600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr14:55585800-55588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:55585800-55589000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:55586000-55593600	Enhancers	Left Ventricle	heart
37	chr14:55586400-55589000	Enhancers	Duodenum Mucosa	Duodenum
38	chr14:55586400-55589200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:55586600-55588800	Weak transcription	Adipose Nuclei	Adipose
40	chr14:55586600-55589000	Enhancers	Hela-S3	cervix
41	chr14:55586600-55589200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:55586800-55589000	Weak transcription	Ovary	ovary
43	chr14:55586800-55592600	Enhancers	Placenta	Placenta
44	chr14:55587000-55589000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:55587000-55591600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:55587000-55595600	Enhancers	Stomach Mucosa	stomach
47	chr14:55587200-55589000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:55587400-55592600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr14:55587600-55588800	Enhancers	HepG2	liver
50	chr14:55587600-55590800	Enhancers	NHEK	skin

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