Variant report

Variant	rs8019707
Chromosome Location	chr14:55569840-55569841
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55567781..55570469-chr14:56684263..56686349,2	K562	blood:
2	chr14:55559803..55562181-chr14:55568621..55570852,2	K562	blood:
3	chr14:55569295..55570334-chr14:55595869..55596604,4	MCF-7	breast:
4	chr14:55568677..55571661-chr14:55571922..55577835,5	K562	blood:
5	chr14:55562349..55566055-chr14:55567766..55570193,3	K562	blood:
6	chr14:55536490..55539101-chr14:55568903..55571706,2	K562	blood:
7	chr14:55568628..55573010-chr14:55614277..55618489,4	K562	blood:
8	chr14:55568626..55570818-chr14:55578433..55580001,2	K562	blood:
9	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
10	chr14:55568925..55571630-chr14:55613554..55616278,2	MCF-7	breast:
11	chr14:55568573..55570268-chr14:55714995..55717036,2	K562	blood:
12	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
13	chr1:153606193..153606801-chr14:55569772..55570432,2	HCT-116	colon:
14	chr14:55517323..55520297-chr14:55568628..55571698,4	K562	blood:
15	chr14:55569822..55570936-chr14:55588765..55589799,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction
ENSG00000189171	Chromatin interaction
ENSG00000271853	Chromatin interaction
ENSG00000160679	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10133915	1.00[CEU][hapmap]
rs10135156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136880	1.00[CEU][hapmap]
rs10138286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138550	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10498473	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2340932	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs28379289	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2879891	1.00[CEU][hapmap]
rs7157520	1.00[EUR][1000 genomes]
rs7157768	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs8009660	1.00[CEU][hapmap]
rs8021306	1.00[CEU][hapmap]
rs8022890	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55564000-55570200	Enhancers	Stomach Mucosa	stomach
2	chr14:55565200-55570600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55566400-55570600	Enhancers	Fetal Lung	lung
4	chr14:55566400-55570800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:55566400-55570800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:55566600-55570000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr14:55566600-55571600	Enhancers	Left Ventricle	heart
8	chr14:55566600-55571600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr14:55566600-55571800	Enhancers	Small Intestine	intestine
10	chr14:55567200-55571400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr14:55567600-55570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:55567600-55571600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:55567800-55570800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:55567800-55571000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr14:55567800-55571000	Enhancers	Pancreas	Pancrea
16	chr14:55567800-55571600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:55568000-55570200	Enhancers	Fetal Muscle Trunk	muscle
18	chr14:55568000-55572200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr14:55568400-55570000	Enhancers	HUVEC	blood vessel
20	chr14:55568400-55570400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:55568400-55570600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:55568400-55570800	Enhancers	Fetal Muscle Leg	muscle
23	chr14:55568400-55571000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:55568400-55571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:55568400-55571600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:55568400-55571600	Enhancers	Right Atrium	heart
27	chr14:55568600-55570000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr14:55568600-55570000	Flanking Active TSS	HMEC	breast
29	chr14:55568600-55570400	Enhancers	Brain Angular Gyrus	brain
30	chr14:55568600-55570600	Enhancers	Brain Substantia Nigra	brain
31	chr14:55568600-55570600	Flanking Active TSS	A549	lung
32	chr14:55568600-55570800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr14:55568600-55571000	Enhancers	Fetal Stomach	stomach
34	chr14:55568600-55571000	Enhancers	Psoas Muscle	Psoas
35	chr14:55568600-55571200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr14:55568600-55571200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr14:55568600-55571200	Enhancers	Fetal Heart	heart
38	chr14:55568600-55571400	Enhancers	Primary B cells from peripheral blood	blood
39	chr14:55568600-55571400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr14:55568600-55571400	Enhancers	Brain Hippocampus Middle	brain
41	chr14:55568600-55571600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr14:55568600-55571600	Enhancers	Placenta	Placenta
43	chr14:55568600-55571600	Enhancers	Fetal Thymus	thymus
44	chr14:55568600-55571600	Enhancers	Placenta Amnion	Placenta Amnion
45	chr14:55568600-55571600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr14:55568600-55571600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr14:55568600-55571600	Enhancers	Spleen	Spleen
48	chr14:55568600-55576000	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr14:55568600-55576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr14:55568800-55570000	Flanking Active TSS	NHEK	skin

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